CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37443	Canola	mitochondrion	95.83	95.11
Bra032560.1-P	Field mustard	mitochondrion, plastid	84.85	84.21
AT1G03055.1	Thale cress	plastid	75.38	75.38
PGSC0003DMT400049687	Potato	extracellular	21.97	47.93
VIT_00s0179g00330.t01	Wine grape	mitochondrion, plastid	44.7	47.77
KRH71353	Soybean	cytosol	43.94	46.59
KRH32085	Soybean	mitochondrion, plastid	44.32	45.7
GSMUA_Achr1P14050_001	Banana	mitochondrion	40.15	43.44
GSMUA_Achr2P08930_001	Banana	mitochondrion, plastid	42.8	40.5
Os11t0587000-01	Rice	plastid	42.05	39.93
TraesCS7A01G418900.1	Wheat	plastid	40.53	38.49
TraesCS7B01G319100.1	Wheat	plastid	40.53	38.35
CDY08324	Canola	cytosol	29.17	38.12
Zm00001d007549_P003	Maize	plastid	39.39	38.1
Zm00001d007560_P004	Maize	plastid	39.39	37.82
Solyc09g065750.2.1	Tomato	cytosol	41.67	37.67
TraesCS7D01G411500.1	Wheat	plastid	39.77	37.5
HORVU7Hr1G096970.10	Barley	plastid	38.64	36.96
KXG28800	Sorghum	plastid	40.15	36.3
CDY34380	Canola	mitochondrion	32.2	33.73
CDY25531	Canola	mitochondrion	31.82	33.33
CDY38220	Canola	plastid	31.82	33.33
CDX90961	Canola	plastid	25.38	26.17
CDX91821	Canola	plastid	25.0	25.48

Protein Annotations

EnsemblPlants:CDY32495	EnsemblPlantsGene:GSBRNA2T00052473001	InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	MetaCyc:PWY-7101
PANTHER:PTHR33591	PANTHER:PTHR33591:SF3	PFAM:PF13225	ProteinID:CDY32495	ProteinID:CDY32495.1	SEG:seg
UniParc:UPI0004EE5E42	UniProt:A0A078H1C8	MapMan:11.9.1.1	:	:	:

Description

BnaA09g51010DBnaA09g51010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1C8]

Coordinates

chrLK032295:-:232717..234599

Molecular Weight (calculated)

29547.1 Da

IEP (calculated)

9.681

GRAVY (calculated)

-0.197

Length

264 amino acids

Sequence
(BLAST)

001: MNTKLSLSQT KIIGFTIRLN DTRTRYGRSS ISATLSSKPA YSGELKVVKE TSGTELLKKK NASNEDNFLS KIAINYLSKT LQDTAGMSSS SSKSTGYDSL
101: VDTATRVAGN LDIKQQHELV LVALDRAFPA VILSLIKMLL PPSKLSREMF ALFTTVFFAW LVGPSEVRET EVNGKKEKSM VFIKKCRFLE QTNCVGMCTH
201: LCKIPSQIFI KNSLGMPIYM MPDFDDLSCK MMFGQEPPEI KDDPVMKQPC FQFCKSNRSY GVKH

Best Arabidopsis Sequence Match ( AT1G03055.1 )
(BLAST)

001: MNTKLSLSQT KIFTFTTWFN DTRSGLDRRS SISPTLCSKP VYSGKLKAAK ETARIETSNT KNASIEDSFF SKIAINYLSK NLQDAAGISS SSKSTDYDRL
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH

Arabidopsis Description

D27Beta-carotene isomerase D27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XA78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.