CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000901.1-P	Field mustard	plastid	98.83	98.83
CDX91821	Canola	plastid	90.62	89.58
AT4G01995.1	Thale cress	plastid	80.86	80.23
PGSC0003DMT400061819	Potato	plastid	56.64	57.77
Solyc06g084610.2.1	Tomato	plastid	55.86	56.97
KRH69204	Soybean	plastid	58.59	56.82
PGSC0003DMT400061815	Potato	cytosol	41.41	53.54
KRH31781	Soybean	plastid	56.25	52.94
VIT_07s0005g01610.t01	Wine grape	plastid	53.52	52.49
Os05t0131100-01	Rice	plastid	53.52	50.74
TraesCS1D01G075900.1	Wheat	plastid	54.3	50.55
TraesCS1B01G092200.1	Wheat	plastid	53.52	49.82
TraesCS1A01G073000.2	Wheat	mitochondrion, plastid	53.52	49.82
EES18959	Sorghum	plastid	53.52	49.46
Zm00001d024718_P004	Maize	plastid	52.34	48.38
TraesCS1B01G092300.1	Wheat	plastid	30.47	44.32
HORVU1Hr1G015940.3	Barley	plastid	52.34	43.65
Os05t0131401-00	Rice	plastid	27.34	39.11
CDY08324	Canola	cytosol	25.39	32.18
CDY25531	Canola	mitochondrion	30.08	30.56
CDY34380	Canola	mitochondrion	30.08	30.56
CDY38220	Canola	plastid	29.3	29.76
CDY37443	Canola	mitochondrion	26.56	25.56
CDY32495	Canola	mitochondrion, plastid	26.17	25.38

Protein Annotations

EnsemblPlants:CDX90961	EnsemblPlantsGene:GSBRNA2T00151714001	InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	MetaCyc:PWY-7101
PANTHER:PTHR33591	PANTHER:PTHR33591:SF2	PFAM:PF13225	ProteinID:CDX90961	ProteinID:CDX90961.1	SEG:seg
UniParc:UPI0004EEEC70	MapMan:35.1	:	:	:	:

Description

BnaA03g26410D

Coordinates

chrLK031864:-:1555748..1560707

Molecular Weight (calculated)

28686.0 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.056

Length

256 amino acids

Sequence
(BLAST)

001: MTILLLHVPP PTTTILLSYS SSPRSTTRTL KLTRRLRCRV SNSSEVKSEY RPGVLDDFFM QSFRNKLVEE VGSDSDKPGY VGLIELVKFL LLKSRTRSET
101: NDAAVRILKS LFPPLILELY KLLIAPLAQG KIAALMVARV TVLTCQWLMG PCKVNTIELP NGESWESGVF VEKCQYLEES KCVGVCINTC KLPTQTFFKD
201: YMGVPLLMEP DFKDYSCQFK FGVAPPEDDG SVNEPCFETC SIASRRKLNS GECPMS

Best Arabidopsis Sequence Match ( AT4G01995.1 )
(BLAST)

001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA

Arabidopsis Description

Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.