Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 6
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000901.1-P | Field mustard | plastid | 80.62 | 81.25 |
| CDX90961 | Canola | plastid | 80.23 | 80.86 |
| CDX91821 | Canola | plastid | 77.91 | 77.61 |
| PGSC0003DMT400061819 | Potato | plastid | 57.36 | 58.96 |
| Solyc06g084610.2.1 | Tomato | plastid | 56.59 | 58.17 |
| KRH69204 | Soybean | plastid | 58.14 | 56.82 |
| VIT_07s0005g01610.t01 | Wine grape | plastid | 54.26 | 53.64 |
| KRH31781 | Soybean | plastid | 55.81 | 52.94 |
| PGSC0003DMT400061815 | Potato | cytosol | 40.31 | 52.53 |
| Os05t0131100-01 | Rice | plastid | 53.1 | 50.74 |
| TraesCS1D01G075900.1 | Wheat | plastid | 53.88 | 50.55 |
| TraesCS1A01G073000.2 | Wheat | mitochondrion, plastid | 53.1 | 49.82 |
| Zm00001d024718_P004 | Maize | plastid | 53.1 | 49.46 |
| EES18959 | Sorghum | plastid | 52.71 | 49.1 |
| TraesCS1B01G092200.1 | Wheat | plastid | 52.33 | 49.09 |
| HORVU1Hr1G015940.3 | Barley | plastid | 52.71 | 44.3 |
| TraesCS1B01G092300.1 | Wheat | plastid | 29.46 | 43.18 |
| Os05t0131401-00 | Rice | plastid | 27.91 | 40.22 |
| AT1G64680.1 | Thale cress | mitochondrion, plastid | 29.84 | 30.8 |
| AT1G03055.1 | Thale cress | plastid | 24.81 | 24.24 |
Protein Annotations
| KEGG:00906+5.2.1.14 | MapMan:35.1 | EntrezGene:828173 | ProteinID:AEE82109.1 | ArrayExpress:AT4G01995 | EnsemblPlantsGene:AT4G01995 |
| RefSeq:AT4G01995 | TAIR:AT4G01995 | RefSeq:AT4G01995-TAIR-G | EnsemblPlants:AT4G01995.1 | TAIR:AT4G01995.1 | EMBL:AY062663 |
| EMBL:AY093324 | InterPro:D27-like | InterPro:DUF4033 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0016853 | RefSeq:NP_680560.1 | PFAM:PF13225 | PO:PO:0000293 | PANTHER:PTHR33591 | PANTHER:PTHR33591:SF2 |
| UniProt:Q8W4C4 | UniParc:UPI00000A6BCE | SEG:seg | : | : | : |
Description
Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
Coordinates
chr4:+:872923..874772
Molecular Weight (calculated)
28638.1 Da
IEP (calculated)
7.842
GRAVY (calculated)
0.027
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.