Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400061819 | Potato | plastid | 62.84 | 65.34 |
Solyc06g084610.2.1 | Tomato | plastid | 61.3 | 63.74 |
KRH69204 | Soybean | plastid | 62.07 | 61.36 |
KRH31781 | Soybean | plastid | 62.07 | 59.56 |
PGSC0003DMT400061815 | Potato | cytosol | 43.3 | 57.07 |
EES18959 | Sorghum | plastid | 59.77 | 56.32 |
Zm00001d024718_P004 | Maize | plastid | 59.0 | 55.6 |
TraesCS1A01G073000.2 | Wheat | mitochondrion, plastid | 58.24 | 55.27 |
TraesCS1B01G092200.1 | Wheat | plastid | 58.24 | 55.27 |
TraesCS1D01G075900.1 | Wheat | plastid | 57.47 | 54.55 |
CDX91821 | Canola | plastid | 54.02 | 54.44 |
AT4G01995.1 | Thale cress | plastid | 53.64 | 54.26 |
CDX90961 | Canola | plastid | 52.49 | 53.52 |
Bra000901.1-P | Field mustard | plastid | 52.49 | 53.52 |
Os05t0131100-01 | Rice | plastid | 54.79 | 52.96 |
HORVU1Hr1G015940.3 | Barley | plastid | 56.32 | 47.88 |
TraesCS1B01G092300.1 | Wheat | plastid | 31.8 | 47.16 |
Os05t0131401-00 | Rice | plastid | 27.2 | 39.66 |
VIT_02s0025g02640.t01 | Wine grape | plastid | 28.35 | 27.82 |
VIT_00s0179g00330.t01 | Wine grape | mitochondrion, plastid | 25.29 | 26.72 |
Protein Annotations
ArrayExpress:VIT_07s0005g01610 | EMBL:FN596502 | EnsemblPlants:VIT_07s0005g01610.t01 | EnsemblPlantsGene:VIT_07s0005g01610 | EntrezGene:100253777 | EntrezGene:LOC100253777 |
InterPro:D27-like | InterPro:DUF4033 | KEGG:00906+5.2.1.14 | PANTHER:PTHR33591 | PANTHER:PTHR33591:SF2 | PFAM:PF13225 |
ProteinID:CBI36963 | ProteinID:CBI36963.3 | RefSeq:XP_002271003 | RefSeq:XP_002271003.1 | unigene:Vvi.5078 | UniParc:UPI0001983B49 |
UniProt:D7U2J7 | wikigene:100253777 | wikigene:LOC100253777 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7:-:4100048..4104802
Molecular Weight (calculated)
28971.3 Da
IEP (calculated)
8.188
GRAVY (calculated)
-0.097
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLVFLRPL TFSPSPPQSK LSVKNPSFRI SFSSAQSNAV EAGEYKPGVF DDLFLNLFRS RMVKEVGWDS EKPGYDGLID VANQLMMKSK SNSKVKEAAV
101: RILISLFPPF LLDLYRMLVA PIGGGKVAAM MVARVTALSC QWLMGPCTVN SVNLPDGSSC SSGVFVERCK YLEESKCVGI CINTCKLPTQ TFFKDYMGVP
201: LAMEPDFTNY SCQFSFGVLP PRPEEDSTLK EPCLEICPNA TRRKEINRNM DNKELVQCPK A
101: RILISLFPPF LLDLYRMLVA PIGGGKVAAM MVARVTALSC QWLMGPCTVN SVNLPDGSSC SSGVFVERCK YLEESKCVGI CINTCKLPTQ TFFKDYMGVP
201: LAMEPDFTNY SCQFSFGVLP PRPEEDSTLK EPCLEICPNA TRRKEINRNM DNKELVQCPK A
001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
Arabidopsis Description
Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.