Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G092200.1 | Wheat | plastid | 93.18 | 59.64 |
| HORVU1Hr1G015940.3 | Barley | plastid | 85.8 | 49.19 |
| Os05t0131401-00 | Rice | plastid | 48.86 | 48.04 |
| EES18959 | Sorghum | plastid | 67.61 | 42.96 |
| Zm00001d024718_P004 | Maize | plastid | 67.05 | 42.6 |
| Os05t0131100-01 | Rice | plastid | 64.77 | 42.22 |
| PGSC0003DMT400061819 | Potato | plastid | 45.45 | 31.87 |
| VIT_07s0005g01610.t01 | Wine grape | plastid | 47.16 | 31.8 |
| Solyc06g084610.2.1 | Tomato | plastid | 43.75 | 30.68 |
| CDX90961 | Canola | plastid | 44.32 | 30.47 |
| Bra000901.1-P | Field mustard | plastid | 44.32 | 30.47 |
| AT4G01995.1 | Thale cress | plastid | 43.18 | 29.46 |
| KRH69204 | Soybean | plastid | 43.75 | 29.17 |
| CDX91821 | Canola | plastid | 42.05 | 28.57 |
| KRH31781 | Soybean | plastid | 43.75 | 28.31 |
| PGSC0003DMT400061815 | Potato | cytosol | 22.73 | 20.2 |
| TraesCS7B01G319100.1 | Wheat | plastid | 25.57 | 16.13 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G092300.1 | EnsemblPlantsGene:TraesCS1B01G092300 | InterPro:D27-like | InterPro:DUF4033 | KEGG:00906+5.2.1.14 | PANTHER:PTHR33591 |
| PANTHER:PTHR33591:SF2 | PFAM:PF13225 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1B:-:94200895..94208581
Molecular Weight (calculated)
19472.3 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.474
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPTTSRLH GHLLPALPSR PPRAPSSSAP SARGPSRRPA SRLYRSSPPV EAPPSGKGGE YRPSFADDFL LAFFRAKMVE VFVEKCKYLE ESKCLGICIN
101: TCKLPTQTFF KDHMGVYLYM EQNFEDYSCQ FNFGVPPPPI DTDKALKEPC LDICTNARRR RELGSSGGPE GLCPQV
101: TCKLPTQTFF KDHMGVYLYM EQNFEDYSCQ FNFGVPPPPI DTDKALKEPC LDICTNARRR RELGSSGGPE GLCPQV
001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
Arabidopsis Description
Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.