Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G092200.1 | Wheat | plastid | 81.43 | 90.91 |
| TraesCS1D01G075900.1 | Wheat | plastid | 81.11 | 90.55 |
| TraesCS1A01G073000.2 | Wheat | mitochondrion, plastid | 80.46 | 89.82 |
| TraesCS1B01G092300.1 | Wheat | plastid | 49.19 | 85.8 |
| Os05t0131100-01 | Rice | plastid | 64.82 | 73.7 |
| Zm00001d024718_P004 | Maize | plastid | 64.5 | 71.48 |
| EES18959 | Sorghum | plastid | 64.5 | 71.48 |
| Os05t0131401-00 | Rice | plastid | 35.5 | 60.89 |
| PGSC0003DMT400061819 | Potato | plastid | 47.23 | 57.77 |
| Solyc06g084610.2.1 | Tomato | plastid | 46.58 | 56.97 |
| VIT_07s0005g01610.t01 | Wine grape | plastid | 47.88 | 56.32 |
| KRH31781 | Soybean | plastid | 46.91 | 52.94 |
| AT4G01995.1 | Thale cress | plastid | 44.3 | 52.71 |
| KRH69204 | Soybean | plastid | 45.28 | 52.65 |
| CDX90961 | Canola | plastid | 43.65 | 52.34 |
| PGSC0003DMT400061815 | Potato | cytosol | 33.55 | 52.02 |
| Bra000901.1-P | Field mustard | plastid | 43.32 | 51.95 |
| CDX91821 | Canola | plastid | 42.02 | 49.81 |
| HORVU7Hr1G096970.10 | Barley | plastid | 22.48 | 25.0 |
| HORVU7Hr1G076030.6 | Barley | plastid | 23.78 | 24.83 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G015940.3 | EnsemblPlantsGene:HORVU1Hr1G015940 | InterPro:D27-like | InterPro:DUF4033 | KEGG:00906+5.2.1.14 | PANTHER:PTHR33591 |
| PANTHER:PTHR33591:SF2 | PFAM:PF13225 | SEG:seg | UniParc:UPI000B48371D | UniProt:A0A287EQL5 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr1H:+:48897343..48899632
Molecular Weight (calculated)
33311.4 Da
IEP (calculated)
9.343
GRAVY (calculated)
-0.191
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: PSPTDRLIPT VLHRLTAGAR SPALVQSTPM ATPATSRFHR HLLPALPSRP PRAPSSSLPS VQGPRRRPPA SPSRLYCSSP PVRKPPSGKG GDYRPSFADD
101: LLLAFFRAKM VEEVGWDSQK PGYEGLIEVA NRLMIKGKSA SETEQSAVRV LQALFPPLLL VLFKALLAPI ANGQLASMMV ARATALSCQW LMGTSSVNSV
201: TLPSGKSLSS GVFVEKCKYL EESKCLGICI NTCKLPTQTF FKDHMGVDLY MEPNFEDYSC QFNFGVPPPP IDTDKALKEP CLDICTSARR RRELGSSGSP
301: DGLCPQV
101: LLLAFFRAKM VEEVGWDSQK PGYEGLIEVA NRLMIKGKSA SETEQSAVRV LQALFPPLLL VLFKALLAPI ANGQLASMMV ARATALSCQW LMGTSSVNSV
201: TLPSGKSLSS GVFVEKCKYL EESKCLGICI NTCKLPTQTF FKDHMGVDLY MEPNFEDYSC QFNFGVPPPP IDTDKALKEP CLDICTSARR RRELGSSGSP
301: DGLCPQV
001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
Arabidopsis Description
Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.