Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90961 | Canola | plastid | 98.83 | 98.83 |
| CDX91821 | Canola | plastid | 91.02 | 89.96 |
| AT4G01995.1 | Thale cress | plastid | 81.25 | 80.62 |
| PGSC0003DMT400061819 | Potato | plastid | 56.64 | 57.77 |
| Solyc06g084610.2.1 | Tomato | plastid | 55.86 | 56.97 |
| KRH69204 | Soybean | plastid | 58.2 | 56.44 |
| PGSC0003DMT400061815 | Potato | cytosol | 41.02 | 53.03 |
| KRH31781 | Soybean | plastid | 55.86 | 52.57 |
| VIT_07s0005g01610.t01 | Wine grape | plastid | 53.52 | 52.49 |
| Os05t0131100-01 | Rice | plastid | 53.12 | 50.37 |
| TraesCS1D01G075900.1 | Wheat | plastid | 53.91 | 50.18 |
| TraesCS1B01G092200.1 | Wheat | plastid | 53.12 | 49.45 |
| TraesCS1A01G073000.2 | Wheat | mitochondrion, plastid | 53.12 | 49.45 |
| EES18959 | Sorghum | plastid | 53.12 | 49.1 |
| Zm00001d024718_P004 | Maize | plastid | 52.73 | 48.74 |
| TraesCS1B01G092300.1 | Wheat | plastid | 30.47 | 44.32 |
| HORVU1Hr1G015940.3 | Barley | plastid | 51.95 | 43.32 |
| Os05t0131401-00 | Rice | plastid | 27.34 | 39.11 |
| Bra027662.1-P | Field mustard | mitochondrion | 30.08 | 30.56 |
| Bra027784.1-P | Field mustard | mitochondrion, plastid | 29.3 | 29.76 |
| Bra032560.1-P | Field mustard | mitochondrion, plastid | 27.73 | 26.69 |
Protein Annotations
| EnsemblPlants:Bra000901.1 | EnsemblPlants:Bra000901.1-P | EnsemblPlantsGene:Bra000901 | InterPro:D27-like | InterPro:DUF4033 | KEGG:00906+5.2.1.14 |
| PANTHER:PTHR33591 | PANTHER:PTHR33591:SF2 | PFAM:PF13225 | SEG:seg | UniParc:UPI0002540613 | UniProt:M4C9M2 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT4G01995 (E=4e-104) | unknown protein
Coordinates
chrA03:-:13809616..13811336
Molecular Weight (calculated)
28636.0 Da
IEP (calculated)
8.020
GRAVY (calculated)
-0.039
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MTILLLHVPP PTTTILLSYS SSPRSTTRTL KLTRRLRCRV SNSSEVKSEY RPGVLDDFFM QSFRNKLVEE VGSDSDKPGY VGLIELVKLL LLKSRTRSET
101: NDAAVRILKS LFPPLILELY KLLIAPLAQG KIAALMVARV TVITCQWLMG PCKVNTIELP NGESWESGVF VEKCQYLEES KCVGVCINTC KLPTQTFFKD
201: YMGVPLLMEP DFKDYSCQFK FGVAPPEDDG SVNEPCFETC SIASRRKLNS GECPMA
101: NDAAVRILKS LFPPLILELY KLLIAPLAQG KIAALMVARV TVITCQWLMG PCKVNTIELP NGESWESGVF VEKCQYLEES KCVGVCINTC KLPTQTFFKD
201: YMGVPLLMEP DFKDYSCQFK FGVAPPEDDG SVNEPCFETC SIASRRKLNS GECPMA
001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA
Arabidopsis Description
Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.