Factsheet for Bra032560.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32495	Canola	mitochondrion, plastid	84.21	84.85
CDY37443	Canola	mitochondrion	80.45	80.45
AT1G03055.1	Thale cress	plastid	65.04	65.53
PGSC0003DMT400049687	Potato	extracellular	22.56	49.59
VIT_00s0179g00330.t01	Wine grape	mitochondrion, plastid	44.74	48.18
KRH71353	Soybean	cytosol	42.86	45.78
KRH32085	Soybean	mitochondrion, plastid	43.98	45.7
GSMUA_Achr1P14050_001	Banana	mitochondrion	40.23	43.85
Os11t0587000-01	Rice	plastid	42.11	40.29
GSMUA_Achr2P08930_001	Banana	mitochondrion, plastid	40.98	39.07
Zm00001d007560_P004	Maize	plastid	39.85	38.55
Zm00001d007549_P003	Maize	plastid	39.47	38.46
TraesCS7A01G418900.1	Wheat	plastid	39.47	37.77
Solyc09g065750.2.1	Tomato	cytosol	41.35	37.67
TraesCS7D01G411500.1	Wheat	plastid	39.47	37.5
HORVU7Hr1G096970.10	Barley	plastid	38.72	37.32
TraesCS7B01G319100.1	Wheat	plastid	38.72	36.92
KXG28800	Sorghum	plastid	39.47	35.96
Bra027662.1-P	Field mustard	mitochondrion	31.95	33.73
Bra027784.1-P	Field mustard	mitochondrion, plastid	31.58	33.33
Bra000901.1-P	Field mustard	plastid	26.69	27.73

Protein Annotations

KEGG:00906+5.2.1.14	MapMan:11.9.1.1	EnsemblPlantsGene:Bra032560	EnsemblPlants:Bra032560.1	EnsemblPlants:Bra032560.1-P	InterPro:D27-like
InterPro:DUF4033	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009653	GO:GO:0009987
GO:GO:0010223	GO:GO:0016859	GO:GO:1901601	UniProt:M4EUS8	PFAM:PF13225	PANTHER:PTHR33591
PANTHER:PTHR33591:SF3	UniParc:UPI0002543011	SEG:seg	:	:	:

Description

AT1G03055 (E=7e-105) | unknown protein

Coordinates

chrA09:+:36618696..36620272

Molecular Weight (calculated)

29676.2 Da

IEP (calculated)

9.415

GRAVY (calculated)

-0.179

Length

266 amino acids

Sequence
(BLAST)

001: MNTKLSLSQT KIIGFTIRLN DTRTRYGRSS ISATLSSKPA YSGELKVVKE TSGTELLKKK NASNEDNFLS KIAINYLSKT LQDTAGMSSS SSKSTGYDSL
101: VDTATRVAGN LDIKQQHELV LVALDRAFPA VILSLIKMLL PPSKLSREMF ALFTTVFFAW LVGPSEVRET EVNGKKEKSM VFIKKCRFLE QTNCVGMCTH
201: LCKIPSQIFI KNSLGMPIYM MPDFDDLSCK MMFGQEPPEI KDDPVMKQPC FQFCKNENVS ANKITS

Best Arabidopsis Sequence Match ( AT1G03055.1 )
(BLAST)

001: MNTKLSLSQT KIFTFTTWFN DTRSGLDRRS SISPTLCSKP VYSGKLKAAK ETARIETSNT KNASIEDSFF SKIAINYLSK NLQDAAGISS SSKSTDYDRL
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH

Arabidopsis Description

D27Beta-carotene isomerase D27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XA78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.