Factsheet for VIT_00s0179g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71353	Soybean	cytosol	61.54	61.04
KRH32085	Soybean	mitochondrion, plastid	59.11	57.03
GSMUA_Achr1P14050_001	Banana	mitochondrion	52.63	53.28
PGSC0003DMT400049687	Potato	extracellular	25.91	52.89
Solyc09g065750.2.1	Tomato	cytosol	58.3	49.32
Os11t0587000-01	Rice	plastid	54.66	48.56
GSMUA_Achr2P08930_001	Banana	mitochondrion, plastid	54.25	48.03
Zm00001d007549_P003	Maize	plastid	52.63	47.62
Zm00001d007560_P004	Maize	plastid	52.23	46.91
TraesCS7A01G418900.1	Wheat	plastid	52.23	46.4
TraesCS7B01G319100.1	Wheat	plastid	52.23	46.24
Bra032560.1-P	Field mustard	mitochondrion, plastid	48.18	44.74
CDY32495	Canola	mitochondrion, plastid	47.77	44.7
TraesCS7D01G411500.1	Wheat	plastid	50.2	44.29
HORVU7Hr1G096970.10	Barley	plastid	48.99	43.84
AT1G03055.1	Thale cress	plastid	46.56	43.56
KXG28800	Sorghum	plastid	51.42	43.49
CDY37443	Canola	mitochondrion	46.15	42.86
VIT_02s0025g02640.t01	Wine grape	plastid	34.01	31.58
VIT_07s0005g01610.t01	Wine grape	plastid	26.72	25.29

Protein Annotations

KEGG:00906+5.2.1.14	EntrezGene:100853223	wikigene:100853223	MapMan:11.9.1.1	ProteinID:CCB49589	ProteinID:CCB49589.1
InterPro:D27-like	InterPro:DUF4033	UniProt:F6HBJ4	EMBL:FN595511	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009653	GO:GO:0009987	GO:GO:0010223	GO:GO:0016859	GO:GO:1901601
EntrezGene:LOC100853223	wikigene:LOC100853223	PFAM:PF13225	PANTHER:PTHR33591	PANTHER:PTHR33591:SF3	UniParc:UPI000210876A
ArrayExpress:VIT_00s0179g00330	EnsemblPlantsGene:VIT_00s0179g00330	EnsemblPlants:VIT_00s0179g00330.t01	RefSeq:XP_003634993	RefSeq:XP_003634993.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:7568954..7571311

Molecular Weight (calculated)

27755.9 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.208

Length

247 amino acids

Sequence
(BLAST)

001: MDAKLVTQHR SHVWAGKRGM HKPRSSPPIL AVLARPADNL TLVKETPSLL TDNWFDRIAI NHLSQSVQAT TGLRNSKSGY ESLVEAAAMV SRNFDPIQQC
101: ELVIEALNKA FPSPILSLIR TLMPQSKFTR EYFAAFTTLF FAWLVGPCKV IESEINGRRE KNVVHIKKCR FLEESNCVGM CLNLCKNPSQ KFIKDSLGMP
201: VNMVPNFDDM SCQMIFGQDP PGDDPVLRQP CYKLCKAKKN HSVNCSI

Best Arabidopsis Sequence Match ( AT1G03055.1 )
(BLAST)

001: MNTKLSLSQT KIFTFTTWFN DTRSGLDRRS SISPTLCSKP VYSGKLKAAK ETARIETSNT KNASIEDSFF SKIAINYLSK NLQDAAGISS SSKSTDYDRL
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH

Arabidopsis Description

D27Beta-carotene isomerase D27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XA78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.