Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32495 | Canola | mitochondrion, plastid | 75.38 | 75.38 |
| CDY37443 | Canola | mitochondrion | 75.0 | 74.44 |
| Bra032560.1-P | Field mustard | mitochondrion, plastid | 65.53 | 65.04 |
| VIT_00s0179g00330.t01 | Wine grape | mitochondrion, plastid | 43.56 | 46.56 |
| PGSC0003DMT400049687 | Potato | extracellular | 21.21 | 46.28 |
| KRH71353 | Soybean | cytosol | 43.18 | 45.78 |
| KRH32085 | Soybean | mitochondrion, plastid | 43.18 | 44.53 |
| Os11t0587000-01 | Rice | plastid | 44.32 | 42.09 |
| TraesCS7A01G418900.1 | Wheat | plastid | 43.56 | 41.37 |
| TraesCS7D01G411500.1 | Wheat | plastid | 43.18 | 40.71 |
| TraesCS7B01G319100.1 | Wheat | plastid | 42.8 | 40.5 |
| HORVU7Hr1G096970.10 | Barley | plastid | 42.05 | 40.22 |
| GSMUA_Achr1P14050_001 | Banana | mitochondrion | 37.12 | 40.16 |
| Zm00001d007549_P003 | Maize | plastid | 40.15 | 38.83 |
| GSMUA_Achr2P08930_001 | Banana | mitochondrion, plastid | 40.91 | 38.71 |
| Zm00001d007560_P004 | Maize | plastid | 40.15 | 38.55 |
| KXG28800 | Sorghum | plastid | 41.29 | 37.33 |
| Solyc09g065750.2.1 | Tomato | cytosol | 39.02 | 35.27 |
| AT1G64680.1 | Thale cress | mitochondrion, plastid | 31.06 | 32.8 |
| AT4G01995.1 | Thale cress | plastid | 24.24 | 24.81 |
Protein Annotations
| KEGG:00906+5.2.1.14 | MapMan:11.9.1.1 | EntrezGene:838334 | EMBL:AC006550 | ProteinID:AEE27521.1 | ArrayExpress:AT1G03055 |
| EnsemblPlantsGene:AT1G03055 | RefSeq:AT1G03055 | TAIR:AT1G03055 | RefSeq:AT1G03055-TAIR-G | EnsemblPlants:AT1G03055.1 | TAIR:AT1G03055.1 |
| Unigene:At.42563 | EMBL:BT010155 | InterPro:D27-like | InterPro:DUF4033 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006629 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010223 | GO:GO:0016853 | GO:GO:0016859 |
| GO:GO:0046872 | GO:GO:1901601 | RefSeq:NP_563673.1 | PFAM:PF13225 | PO:PO:0000293 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020090 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR33591 | PANTHER:PTHR33591:SF3 |
| UniProt:Q7XA78 | UniParc:UPI0000162C25 | : | : | : | : |
Description
D27Beta-carotene isomerase D27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XA78]
Coordinates
chr1:-:710018..711857
Molecular Weight (calculated)
29796.7 Da
IEP (calculated)
8.896
GRAVY (calculated)
-0.358
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTKLSLSQT KIFTFTTWFN DTRSGLDRRS SISPTLCSKP VYSGKLKAAK ETARIETSNT KNASIEDSFF SKIAINYLSK NLQDAAGISS SSKSTDYDRL
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.