Factsheet for Zm00001d024718_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18959	Sorghum	plastid	91.34	91.34
Os05t0131100-01	Rice	plastid	74.73	76.67
TraesCS1B01G092200.1	Wheat	plastid	74.37	74.91
TraesCS1D01G075900.1	Wheat	plastid	73.65	74.18
TraesCS1A01G073000.2	Wheat	mitochondrion, plastid	73.65	74.18
TraesCS1B01G092300.1	Wheat	plastid	42.6	67.05
HORVU1Hr1G015940.3	Barley	plastid	71.48	64.5
Os05t0131401-00	Rice	plastid	41.52	64.25
VIT_07s0005g01610.t01	Wine grape	plastid	55.6	59.0
PGSC0003DMT400061819	Potato	plastid	52.35	57.77
Solyc06g084610.2.1	Tomato	plastid	51.99	57.37
KRH69204	Soybean	plastid	52.71	55.3
KRH31781	Soybean	plastid	52.71	53.68
AT4G01995.1	Thale cress	plastid	49.46	53.1
Bra000901.1-P	Field mustard	plastid	48.74	52.73
PGSC0003DMT400061815	Potato	cytosol	37.55	52.53
CDX90961	Canola	plastid	48.38	52.34
CDX91821	Canola	plastid	47.65	50.97
Zm00001d045816_P001	Maize	mitochondrion	13.36	28.46
Zm00001d007560_P004	Maize	plastid	25.63	25.82
Zm00001d007549_P003	Maize	plastid	25.27	25.64
Zm00001d035081_P001	Maize	plastid	26.71	24.26

Protein Annotations

EMBL:BT070182	EnsemblPlants:Zm00001d024718_P004	EnsemblPlants:Zm00001d024718_T004	EnsemblPlantsGene:Zm00001d024718	EntrezGene:100279799	GO:GO:0003674
GO:GO:0003824	GO:GO:0016853	InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	PANTHER:PTHR33591
PANTHER:PTHR33591:SF2	PFAM:PF13225	ProteinID:AQK41916.1	SEG:seg	UniParc:UPI000195D5E9	UniProt:C0PPG3
MapMan:35.1	:	:	:	:	:

Description

Beta-carotene isomerase D27 chloroplastic

Coordinates

chr10:-:84950298..84953025

Molecular Weight (calculated)

30225.7 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.115

Length

277 amino acids

Sequence
(BLAST)

001: MAPPLATRGL PLASRGPPSC AASCSSCLPS YLQLGRRPSR RFRCSSPQVD AAAVPPGKGG EYRPSFADDL LLAFFRSKMV KEVGWDSEKP GYAGLMEVAN
101: RLMVKGKSAL ETEQAAVRVL QSLFPPLLLV LYKALLAPIA NGQLAAMMLA RATAISCQWL MGSCSVNSVT LPDGKSWSSG VFVEKCKYLE ESKCLGICIN
201: TCKLPTQTFF KDHMGVDLYM EPNFEDYSCQ FNFGVPPPPL DTDKALKEPC LDICTNARRR RELGRNSSPD ELSCPQV

Best Arabidopsis Sequence Match ( AT4G01995.1 )
(BLAST)

001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA

Arabidopsis Description

Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.