CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024718_P004	Maize	plastid	91.34	91.34
Os05t0131100-01	Rice	plastid	74.01	75.93
TraesCS1B01G092200.1	Wheat	plastid	74.37	74.91
TraesCS1A01G073000.2	Wheat	mitochondrion, plastid	74.01	74.55
TraesCS1D01G075900.1	Wheat	plastid	73.65	74.18
TraesCS1B01G092300.1	Wheat	plastid	42.96	67.61
HORVU1Hr1G015940.3	Barley	plastid	71.48	64.5
Os05t0131401-00	Rice	plastid	40.79	63.13
VIT_07s0005g01610.t01	Wine grape	plastid	56.32	59.77
PGSC0003DMT400061819	Potato	plastid	51.99	57.37
Solyc06g084610.2.1	Tomato	plastid	51.62	56.97
KRH69204	Soybean	plastid	53.43	56.06
KRH31781	Soybean	plastid	53.07	54.04
CDX90961	Canola	plastid	49.46	53.52
Bra000901.1-P	Field mustard	plastid	49.1	53.12
PGSC0003DMT400061815	Potato	cytosol	37.91	53.03
AT4G01995.1	Thale cress	plastid	49.1	52.71
CDX91821	Canola	plastid	49.1	52.51
KXG24264	Sorghum	plastid	27.44	28.25
KXG28800	Sorghum	plastid	25.27	23.97

Protein Annotations

EnsemblPlants:EES18959	EnsemblPlantsGene:SORBI_3009G030800	EntrezGene:8068177	InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14
MetaCyc:PWY-7101	PANTHER:PTHR33591	PANTHER:PTHR33591:SF2	PFAM:PF13225	ProteinID:EES18959	ProteinID:EES18959.1
RefSeq:XP_002440529.1	SEG:seg	UniParc:UPI0001A88B0C	UniProt:C5YZG8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:-:2742663..2744934

Molecular Weight (calculated)

30227.5 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.182

Length

277 amino acids

Sequence
(BLAST)

001: MATQLATRGL PLASRGRSSC AASCSSCPPS SPHLGRRPSR RFRCSSPQVD AAAAPPAKGG EYRPSFADDL LLAFFRSKMV EEVGWDSEKP GYAGLMEVAN
101: RLMVKGKSAM ETEQAAVRVL QSLFPPVLLV LYKALLSPIA NGQLAAMMLA RATALSCQWL MGPCSVNSVT LPDGKSWSSG VFVEKCKYLE ESKCLGICIN
201: TCKLPTQTFF KDHMGVDLYM EPNFEDYSCQ FNFGVPPPPL DTDKALKEPC LDICTNARRR RELGRNSSPD ELSCPQV

Best Arabidopsis Sequence Match ( AT4G01995.1 )
(BLAST)

001: MAVLIQVLLP PPTTIVFSNS FSTKLILTRR LRCRISNSSE VKSDEGAPKL EYKPGPLDDF FMQSFRNKLV EEVGSDSEKP GYVGLIELVK LLLLKGRTRS
101: ETSDAAVRIL KSLFPPLILE LYKLLIAPIA QGKLAALMVA RVTVLTCQWL MGPSKVNIID LPNGESWDSG VFVEKCQYLE ESKCVGVCIN TCKLPTQTFF
201: KDYMGVPLVM EPNFKDYSCQ FKFGVAPPED DGNVNEPCFE TCSIAGRRKL KSGECPLA

Arabidopsis Description

Beta-carotene isomerase D27 [Source:UniProtKB/TrEMBL;Acc:Q8W4C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.