Factsheet for Solyc08g008630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015016	Potato	plastid	95.9	95.19
GSMUA_Achr3P12260_001	Banana	cytosol	63.81	79.17
CDY08324	Canola	cytosol	58.21	77.23
KRH17565	Soybean	mitochondrion, plastid	75.37	75.94
CDY25531	Canola	mitochondrion	70.9	75.4
KRH70396	Soybean	plastid	75.37	74.81
CDY34380	Canola	mitochondrion	70.15	74.6
Bra027662.1-P	Field mustard	mitochondrion	69.4	73.81
Bra027784.1-P	Field mustard	mitochondrion, plastid	69.03	73.41
CDY38220	Canola	plastid	69.03	73.41
AT1G64680.1	Thale cress	mitochondrion, plastid	67.91	72.8
VIT_02s0025g02640.t01	Wine grape	plastid	70.52	71.05
TraesCS7D01G314600.1	Wheat	plastid	64.18	65.15
Os08t0114100-01	Rice	plastid	63.43	65.13
KXG24264	Sorghum	plastid	65.3	65.06
TraesCS7A01G317900.1	Wheat	plastid	63.81	64.77
TraesCSU01G097100.1	Wheat	plastid	63.06	64.75
Zm00001d045816_P001	Maize	mitochondrion	29.85	61.54
HORVU7Hr1G076030.6	Barley	plastid	62.69	57.14
Zm00001d035081_P001	Maize	plastid	60.45	53.11
Solyc06g084610.2.1	Tomato	plastid	27.24	29.08
Solyc09g065750.2.1	Tomato	cytosol	31.34	28.77

Protein Annotations

EnsemblPlants:Solyc08g008630.2.1	EnsemblPlantsGene:Solyc08g008630.2	InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	PANTHER:PTHR33591
PANTHER:PTHR33591:SF1	PFAM:PF13225	SEG:seg	UniParc:UPI000276AE8B	UniProt:K4CIZ7	MapMan:35.1

Description

No Description!

Coordinates

chr8:+:3021327..3023012

Molecular Weight (calculated)

30320.5 Da

IEP (calculated)

8.615

GRAVY (calculated)

-0.359

Length

268 amino acids

Sequence
(BLAST)

001: MVLLSIPYSF PSFNNYISQR RSQSQSQRRY VKIGIRCGIA EPSGEPAPLG QKTKYNDGLF EKAFMTLFAR KMENFGANKK ESDQKKKGFF DYDYDSFVDV
101: SRKVMQGRSR LQQQQVVRQV LMSMLPPGAP AQFRKLFPPT QWAAEFNAAI TVPFFFWLVG PSEVVEVEVD GVKQKSGVHI KKCRYLENSG CVGMCVNMCK
201: IPTQDFFTNE FGLPLTMNPN FEDMSCEMIY GQVPPPFEED PVSKQPCYAN ICTIANPSSN VCPKLSAN

Best Arabidopsis Sequence Match ( AT1G64680.1 )
(BLAST)

001: MAAIASLQAV NLTFRRRSTR CGIAEPSGEP APMGLKTRYE DGLVERVFMG LFARKMDKFG SKKKKDTKEK GFWEYDYESF VEVSKRVMQG RSRVQQQEAV
101: REVLLSMLPP GAPEQFRKLF PPTKWAAEFN AALTVPFFHW LVGPSQVIEV EVNGVKQRSG VRIKKCRYLE NSGCVGMCVN MCKIPTQDFF TNEFGLPLTM
201: NPNYEDMSCE MIYGQAPPAF EEDVATKQPC LADICSMSNP SSPICPKLEA

Arabidopsis Description

At1g64680 [Source:UniProtKB/TrEMBL;Acc:Q9SGU7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.