Factsheet for HORVU4Hr1G037210.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

vacuole: 19391183

msms PMID: 19391183 doi

T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia

Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G156500.1	Wheat	cytosol, peroxisome, plasma membrane	93.99	97.69
TraesCS4B01G161500.2	Wheat	cytosol, peroxisome, plasma membrane	93.32	96.99
TraesCS4D01G156900.2	Wheat	cytosol, peroxisome, plasma membrane	93.32	96.77
Os03t0397400-01	Rice	golgi, peroxisome, plasma membrane	85.75	88.1
Zm00001d047242_P001	Maize	golgi, peroxisome, plasma membrane	83.52	86.01
Zm00001d029432_P002	Maize	golgi, peroxisome, plasma membrane	83.52	86.01
EER94732	Sorghum	cytosol, peroxisome, plasma membrane	84.41	85.17
Solyc03g123790.2.1	Tomato	plasma membrane	68.6	80.42
GSMUA_Achr3P05680_001	Banana	plasma membrane	67.48	75.75
PGSC0003DMT400023736	Potato	golgi, peroxisome, plasma membrane	71.05	73.5
Solyc12g055750.1.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	70.6	73.04
KRH09614	Soybean	golgi, peroxisome, plasma membrane	70.16	72.58
KRH23701	Soybean	golgi, peroxisome, plasma membrane	70.6	72.54
VIT_09s0018g01840.t01	Wine grape	plasma membrane	72.16	71.52
HORVU2Hr1G112420.3	Barley	cytosol	67.48	68.4
HORVU2Hr1G102840.16	Barley	endoplasmic reticulum, plasma membrane	42.76	42.2
VIT_14s0083g00390.t01	Wine grape	cytosol	14.92	42.14
HORVU3Hr1G049060.8	Barley	endoplasmic reticulum, peroxisome, plasma membrane, plastid	40.76	38.61

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	UniProt:A0A287NTR7	InterPro:CAX	InterPro:CaH_exchang
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0006816
GO:GO:0008150	GO:GO:0008324	GO:GO:0015369	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:0070588	GO:GO:0098655	EnsemblPlantsGene:HORVU4Hr1G037210	EnsemblPlants:HORVU4Hr1G037210.1	InterPro:NaCa_Exmemb	PFAM:PF01699
PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846	TMHMM:TMhelix	UniParc:UPI000B47B346
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:277372971..277392693

Molecular Weight (calculated)

49256.5 Da

IEP (calculated)

5.046

GRAVY (calculated)

0.542

Length

449 amino acids

Sequence
(BLAST)

001: MMGAADKAEL GFEEDDDMVA GTAPPAMKMQ SLDFEHIGSL AAVAESLSPR SKWRMALRSI RIVIFHAKIN VLLPFGPLAI TLHYLSGNHQ GWVFLFSLVG
101: ITPLAERLGY ATEQLACYTG PTIGGLLNAT FGNATEMIIS IYALKNGMIR VVQQSLLGSI LSNMLLVLGC AFFAGGLAHP NRDQVFNKAS AVVNSGLLLM
201: AVLGLMFPAV LHFTHSEAHY GKSEVSLSRF SSCIMLVAYA SYLFFQLKSQ RSLYSPIGEE ESTEDEEDEK EITQGEAISW LFVLTIWISI LSGYLVDAIQ
301: GASESLNMPL AFISVILLPI VGNAAEHASA IMFAMRNKLD ITLGVAIGSS TQISMFVIPF CVVIGWMMGE EMDLNFQLFE TATLFITVLV VAFMLQEGTS
401: NYFKGLMLIL CYLIVAASFF VHVDPKSSMY YFSPFNLHNY IVNNPLFKV

Best Arabidopsis Sequence Match ( AT1G55730.2 )
(BLAST)

001: MGCCKVPALI QAQVEMGLVN DVEHKSLFRR DTDSPERKAA SLMEQGSLSA SFRECSTKTP NNSVLQSFKI VILSNKLNLL LPFGPLAILL HYLTDNKGWI
101: FLLSLVGITP LAERLGYATE QLACYTGSTV GGLLNATFGN VTELIISIFA LKSGMIRVVQ LTLLGSILSN MLLVLGCAFF CGGLVFSQKE QVFDKGNAVV
201: NSGLLLMAVM GLLFPAVLHY THSEVHAGSS ELALSRFSSC IMLVAYAAYL FFQLKSQPSS YTPLTEETNQ NEETSDDDED PEISKWEAII WLSILTAWVS
301: LLSGYLVDAI EGASVSWKIP ISFISVILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS SIQISMFAVP FCVVIGWMMG AQMDLNFQLF ETATLFITVI
401: VVAFFLQEGT SNYFKGLMLI LCYLIVAASF FVHEDPHQDD I

Arabidopsis Description

CAX5Vacuolar cation/proton exchanger 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L783]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.