CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50388	Soybean	nucleus	89.91	90.99
CDY71075	Canola	nucleus	13.65	38.02
VIT_01s0011g05020.t01	Wine grape	nucleus	31.16	32.41
KRH31116	Soybean	nucleus	16.91	31.67
KRG97769	Soybean	nucleus	16.02	31.03
KRH39103	Soybean	nucleus	29.08	30.53
KRH73152	Soybean	nucleus	16.02	30.51
KRH60534	Soybean	nucleus	32.05	30.08
KRH49082	Soybean	nucleus	18.1	29.05
KRG99904	Soybean	nucleus	18.1	29.05
KRH48612	Soybean	nucleus	30.56	28.85
KRH23053	Soybean	nucleus	18.1	28.77
KRH10279	Soybean	nucleus	18.69	28.77
KRH41831	Soybean	nucleus	19.58	27.73
CDX75955	Canola	nucleus	27.6	26.57
AT3G18010.1	Thale cress	nucleus	27.6	26.57
KRH29810	Soybean	nucleus	20.47	26.44
KRH15387	Soybean	nucleus	18.1	26.41
Bra001694.1-P	Field mustard	nucleus	27.6	26.35
CDY51928	Canola	nucleus	27.6	26.35
CDY66658	Canola	nucleus	27.3	26.21
Bra022267.1-P	Field mustard	nucleus	27.0	25.93
CDX92182	Canola	nucleus	27.0	25.93
KRH52024	Soybean	nucleus	17.51	25.65
KRH05655	Soybean	nucleus	18.4	25.41
KRH61328	Soybean	nucleus	16.62	25.0
KRH76665	Soybean	nucleus	21.66	24.66
KRH28790	Soybean	nucleus	21.07	24.57
KRH24809	Soybean	nucleus	20.47	21.1
KRH51590	Soybean	nucleus	10.98	16.89
KRH60910	Soybean	nucleus	10.39	16.83
KRH01611	Soybean	nucleus	12.17	15.41
KRH36192	Soybean	nucleus	12.76	15.3
KRG90565	Soybean	nucleus	12.46	14.79
KRG94925	Soybean	nucleus	12.17	14.64
KRH64971	Soybean	nucleus	12.17	13.9
KRH70496	Soybean	nucleus	10.68	13.74
KRH32713	Soybean	nucleus	14.54	12.16
KRH30862	Soybean	nucleus	14.24	12.0
KRH20358	Soybean	nucleus	13.06	11.31
KRH50138	Soybean	nucleus	12.76	11.08

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100788830	MapMan:15.5.3.6	EMBL:ACUP02012200	EnsemblPlantsGene:GLYMA_20G017600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7N0S9	EnsemblPlants:KRG89341
ProteinID:KRG89341	ProteinID:KRG89341.1	ProteinID:KRG89342.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF224	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00023DD9E1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:1723158..1729805

Molecular Weight (calculated)

37941.0 Da

IEP (calculated)

7.588

GRAVY (calculated)

-0.845

Length

337 amino acids

Sequence
(BLAST)

001: MSDSFGSTFH SSTPNSTLNS HAPPKITTFC SIAQPYCICT HCNHILTFNH HVGNVAEEGT NSTGSHNNNL QSQQQQSTRW SPTPVQLLVL EELYRQGTKT
101: PSAEQIQQIA SQLRQFGKIE GKNVFYWFQN HKARERQKRR RREMEENNNN NISASSSGEG LKETGCGVKE TKKWASTSNC SGHAEDSAAL DIAEKGSNGW
201: TQFEGKDSIQ VLMRRNIAEK QAKLQEIMEM PCFPPVTMEA STPTTSHRRT THYNTQLLTP QNYNNLPSSV INRESLNYYG GEENAAPRTL DLFPHKRDDQ
301: HGISLAERKS SMFCASASMD TEVTSNNQFF EFLPLRN

Best Arabidopsis Sequence Match ( AT3G18010.1 )
(BLAST)

001: MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA
101: DHIQQITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ETGHEETVLS TASLVSNHGF DKKDPPGYKV EQVKNWICSV GCDTQPEKPS RDYHLEEPAN
201: IRVEHNARCG GDERRSFLGI NTTWQMMQLP PSFYSSSHHH HQRNLILNSP TVSSNMSNSN NAVSASKDTV TVSPVFLRTR EATNTETCHR NGDDNKDQEQ
301: HEDCSNGELD HQEQTLELFP LRKEGFCSDG EKDKNISGIH CFYEFLPLKN

Arabidopsis Description

WOX1WUSCHEL-related homeobox 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.