Factsheet for VIT_01s0011g05020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g02460.t01	Wine grape	nucleus	55.25	52.03
CDY71075	Canola	nucleus	16.67	44.63
VIT_06s0004g03780.t01	Wine grape	nucleus	17.9	43.94
VIT_13s0019g03460.t01	Wine grape	nucleus	16.05	36.88
CDX75955	Canola	nucleus	38.27	35.43
AT3G18010.1	Thale cress	nucleus	38.27	35.43
Bra001694.1-P	Field mustard	nucleus	38.58	35.41
CDY51928	Canola	nucleus	38.58	35.41
CDY66658	Canola	nucleus	37.35	34.47
Bra022267.1-P	Field mustard	nucleus	36.73	33.9
CDX92182	Canola	nucleus	36.73	33.9
KRH50388	Soybean	nucleus	32.41	31.53
VIT_18s0001g10160.t01	Wine grape	nucleus	20.37	31.28
KRG89341	Soybean	nucleus	32.41	31.16
VIT_04s0023g03310.t01	Wine grape	nucleus	20.99	24.29
VIT_04s0044g00160.t01	Wine grape	nucleus	13.27	18.22
VIT_04s0044g00150.t01	Wine grape	nucleus	13.27	17.99
VIT_18s0122g01140.t01	Wine grape	nucleus	13.58	15.77
VIT_08s0056g01200.t01	Wine grape	nucleus	11.42	15.68
VIT_10s0003g00560.t01	Wine grape	nucleus	17.28	13.59

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250994	wikigene:100250994	MapMan:15.5.3.6	EMBL:AM463144	ProteinID:CAN77014
ProteinID:CAN77014.1	ProteinID:CCB50824	ProteinID:CCB50824.1	ncoils:Coil	UniProt:F6HFH5	EMBL:FN595752
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	EntrezGene:LOC100250994	wikigene:LOC100250994	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF509	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000210878B	ArrayExpress:VIT_01s0011g05020	EnsemblPlantsGene:VIT_01s0011g05020
EnsemblPlants:VIT_01s0011g05020.t01	RefSeq:XP_002280774	RefSeq:XP_002280774.2	:	:	:

Description

No Description!

Coordinates

chr1:-:4685930..4687592

Molecular Weight (calculated)

36977.3 Da

IEP (calculated)

6.959

GRAVY (calculated)

-0.721

Length

324 amino acids

Sequence
(BLAST)

001: MSDSFHGRKL RPLVPRPNAS VLPKITVNST VAISPCISHL HGTDLFALNH HLGGTSDQQR KTDFNTQPFG SSRWNPTPEQ LQALEELYRR GTRTPTAEQI
101: QQIAAQLRLF GKIEGKNVFY WFQNHKARER QKRRRELESD SEEQQRDNGS LERKESVLRR TCIEVEQTKN WVVPSSNCST LSEESVSIQR AAVAESRTDV
201: WFQFEERELQ QTRSTVERQA TWQLMGLTSS PPSQLIDTIT TTTVAEALNT IYPKQKPLSP QSLRPNTHLE HETRESQTLQ LFPVQGGQSF NAANEIISVA
301: EMENGLPITT IDTNFTPNQF FEFL

Best Arabidopsis Sequence Match ( AT3G18010.1 )
(BLAST)

001: MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA
101: DHIQQITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ETGHEETVLS TASLVSNHGF DKKDPPGYKV EQVKNWICSV GCDTQPEKPS RDYHLEEPAN
201: IRVEHNARCG GDERRSFLGI NTTWQMMQLP PSFYSSSHHH HQRNLILNSP TVSSNMSNSN NAVSASKDTV TVSPVFLRTR EATNTETCHR NGDDNKDQEQ
301: HEDCSNGELD HQEQTLELFP LRKEGFCSDG EKDKNISGIH CFYEFLPLKN

Arabidopsis Description

WOX1WUSCHEL-related homeobox 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.