Factsheet for VIT_04s0023g03310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28790	Soybean	nucleus	65.36	63.32
KRH76665	Soybean	nucleus	66.43	62.84
GSMUA_Achr7P07430_001	Banana	nucleus	31.79	62.24
Solyc02g083950.2.1	Tomato	nucleus	51.43	52.94
PGSC0003DMT400009157	Potato	nucleus	53.21	51.92
AT2G17950.1	Thale cress	nucleus	43.57	41.78
Bra039894.1-P	Field mustard	nucleus	43.93	40.73
Bra037245.1-P	Field mustard	nucleus	44.64	40.19
Bra024485.1-P	Field mustard	nucleus	42.14	40.14
VIT_06s0004g03780.t01	Wine grape	nucleus	17.86	37.88
VIT_13s0019g03460.t01	Wine grape	nucleus	17.14	34.04
CDY29211	Canola	mitochondrion	15.71	29.53
VIT_18s0001g10160.t01	Wine grape	nucleus	21.07	27.96
VIT_01s0011g05020.t01	Wine grape	nucleus	24.29	20.99
VIT_17s0000g02460.t01	Wine grape	nucleus	25.0	20.35
VIT_08s0056g01200.t01	Wine grape	nucleus	16.07	19.07
VIT_04s0044g00150.t01	Wine grape	nucleus	13.93	16.32
VIT_18s0122g01140.t01	Wine grape	nucleus	15.71	15.77
VIT_04s0044g00160.t01	Wine grape	nucleus	13.21	15.68
VIT_10s0003g00560.t01	Wine grape	nucleus	15.0	10.19

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267850	wikigene:100267850	MapMan:15.5.3.6	ProteinID:ACO88950	ProteinID:ACO88950.1
EMBL:AM447418	ProteinID:CAN80814	ProteinID:CAN80814.1	ProteinID:CBI17382	ProteinID:CBI17382.3	UniProt:D7SP03
EMBL:FJ822989	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	EntrezGene:LOC100267850	wikigene:LOC100267850	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF123	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00015CB44D	ArrayExpress:VIT_04s0023g03310	EnsemblPlantsGene:VIT_04s0023g03310
EnsemblPlants:VIT_04s0023g03310.t01	RefSeq:XP_002266323	RefSeq:XP_002266323.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:19837737..19839174

Molecular Weight (calculated)

31389.2 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.915

Length

280 amino acids

Sequence
(BLAST)

001: MEPQQQLQQQ QQQNQQQPNE DSGSSKGSFL CRQSSTRWTP TTDQIRILKD LYYNNGVRSP SAEQIQRISA RLRQYGKIEG KNVFYWFQNH KARERQKKRF
101: TTDMPMQRSL GNAGWRPDDP IHNKFHTIPT PGISSPSSSS SPSVLAVGQM GSFGYGSVER SFTDCSISAG GGRGGVGGSI NQSFEWVGMD PYSSSYALFD
201: KRKTMGESFE EEQEEEATPE IETLPLFPMH AEDITGFCNI KPESDAYYSG WYRPADAKTS SRTSLELSLN SYAGRSPDSP

Best Arabidopsis Sequence Match ( AT2G17950.1 )
(BLAST)

001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN

Arabidopsis Description

WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.