Factsheet for VIT_08s0056g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069529	Potato	nucleus	60.59	58.37
Solyc06g072890.1.1	Tomato	nucleus	60.59	54.17
KRG94925	Soybean	nucleus	61.02	51.43
Bra036446.1-P	Field mustard	nucleus	57.2	50.94
GSMUA_Achr10P...	Banana	nucleus	50.85	49.18
KRH64971	Soybean	nucleus	60.59	48.47
CDY38461	Canola	nucleus	55.51	47.81
AT5G17810.2	Thale cress	nucleus	54.24	47.76
Bra002108.1-P	Field mustard	nucleus	55.08	47.62
CDY21173	Canola	nucleus	58.05	47.4
CDY29949	Canola	nucleus	58.05	47.4
Bra023638.1-P	Field mustard	nucleus	55.08	47.27
Zm00001d022524_P001	Maize	nucleus	51.69	47.1
CDY16883	Canola	nucleus	55.08	47.1
Os07t0684900-01	Rice	nucleus	52.12	46.95
TraesCS2B01G117900.1	Wheat	nucleus	51.27	46.36
CDY02686	Canola	nucleus	55.51	46.29
CDY66087	Canola	nucleus	54.24	45.71
TraesCS2A01G100700.1	Wheat	nucleus	51.27	45.66
TraesCS2D01G100200.1	Wheat	nucleus	50.85	45.45
GSMUA_Achr10P...	Banana	nucleus	48.73	43.23
AT3G03660.3	Thale cress	nucleus, plastid	59.32	42.94
TraesCS4D01G176400.1	Wheat	nucleus	54.24	41.83
TraesCS4B01G174400.1	Wheat	nucleus	54.66	41.75
TraesCS4A01G130200.1	Wheat	nucleus	54.24	41.69
TraesCS3A01G073500.1	Wheat	nucleus	45.76	41.54
TraesCS3D01G073300.1	Wheat	nucleus	45.76	41.38
Bra031980.1-P	Field mustard	nucleus	56.36	41.3
HORVU3Hr1G013290.3	Barley	nucleus	45.34	41.0
KXG39473	Sorghum	nucleus	54.24	40.76
TraesCS3B01G087800.1	Wheat	nucleus	44.92	40.61
CDY51756	Canola	plastid	55.93	40.49
Zm00001d047559_P001	Maize	nucleus	53.81	40.32
CDY50656	Canola	nucleus	57.2	39.82
Zm00001d028986_P001	Maize	nucleus	54.24	39.63
Os08t0242400-01	Rice	nucleus	47.46	39.44
HORVU3Hr1G013330.1	Barley	nucleus	32.2	39.18
KXG24798	Sorghum	nucleus	45.76	39.13
CDY72488	Canola	nucleus, plastid	40.25	38.46
GSMUA_Achr3P09460_001	Banana	nucleus	52.12	38.44
OQU90491	Sorghum	nucleus	41.53	37.69
GSMUA_Achr6P15910_001	Banana	nucleus	50.0	37.22
GSMUA_Achr5P27730_001	Banana	nucleus	48.31	36.54
Zm00001d024410_P001	Maize	nucleus	44.92	36.05
Os03t0325600-01	Rice	nucleus	52.97	35.11
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	51.69	33.61
GSMUA_Achr8P01590_001	Banana	nucleus	51.69	29.05
HORVU4Hr1G051530.5	Barley	nucleus	41.1	28.12
VIT_10s0003g00560.t01	Wine grape	nucleus	39.83	22.82
VIT_06s0004g03780.t01	Wine grape	nucleus	12.29	21.97
VIT_13s0019g03460.t01	Wine grape	nucleus	12.29	20.57
VIT_04s0044g00150.t01	Wine grape	nucleus	19.07	18.83
VIT_04s0044g00160.t01	Wine grape	nucleus	18.64	18.64
VIT_18s0122g01140.t01	Wine grape	nucleus	21.19	17.92
VIT_04s0023g03310.t01	Wine grape	nucleus	19.07	16.07
VIT_18s0001g10160.t01	Wine grape	nucleus	13.98	15.64
VIT_17s0000g02460.t01	Wine grape	nucleus	17.37	11.92
VIT_01s0011g05020.t01	Wine grape	nucleus	15.68	11.42

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246660	wikigene:100246660	MapMan:15.5.3.6	ProteinID:CBI31211	ProteinID:CBI31211.3
UniProt:D7TL39	EMBL:FN595995	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	EntrezGene:LOC100246660	wikigene:LOC100246660	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF185	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001BE385D	ArrayExpress:VIT_08s0056g01200	EnsemblPlantsGene:VIT_08s0056g01200
EnsemblPlants:VIT_08s0056g01200.t01	RefSeq:XP_002269282	RefSeq:XP_002269282.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:1900037..1901212

Molecular Weight (calculated)

25877.4 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.391

Length

236 amino acids

Sequence
(BLAST)

001: MEDRGQDHGL ERNEPVRSRW TPKPEQIIIL ESIFNSGMVN PPKDETVRIR KLLEPYGSVG DANVFYWFQN RRSRSRRRQR QIQASLAGDR GAQAHAGGAI
101: HYQSNLMPPS AFVPSSSSCL VGSSSSCGGM NDDGVDNLFS FSGQVGLQEM ENSSGVTSTL CPSNTSNLHY QSGCVTVFIN GVPTEVPKGS FDMKAMFGQD
201: FVLVHSSGVP VPFNEFGFSM QSLQHGESYF LVSIAR

Best Arabidopsis Sequence Match ( AT3G03660.1 )
(BLAST)

001: MDQEQTPHSP TRHSRSPPSS ASGSTSAEPV RSRWSPKPEQ ILILESIFHS GMVNPPKEET VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA
101: AAADATTNTC DQTMMVSNSL PHHSGSDLGF GGCSTSSNYL FASSSSSYGG GCDNQSNSGM ENLLTMSGQM SYHEATHHHY QNHSSNVTSI LCPSDQNSNF
201: QYQQGAITVF INGVPTEVTR GGIDMKATFG EDLVLVHSSG VPLPTDEFGF LMHSLQHGEA YFLVPRQT

Arabidopsis Description

WOX11WUSCHEL related homeobox 11 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LND8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.