Factsheet for Solyc06g072890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069529	Potato	nucleus	83.33	89.8
VIT_08s0056g01200.t01	Wine grape	nucleus	54.17	60.59
GSMUA_Achr10P...	Banana	nucleus	46.59	50.41
Bra036446.1-P	Field mustard	nucleus	48.48	48.3
Bra002108.1-P	Field mustard	nucleus	49.62	47.99
CDY16883	Canola	nucleus	50.0	47.83
TraesCS2B01G117900.1	Wheat	nucleus	46.59	47.13
CDY38461	Canola	nucleus	48.86	47.08
Os07t0684900-01	Rice	nucleus	46.21	46.56
Bra023638.1-P	Field mustard	nucleus	48.48	46.55
KRG94925	Soybean	nucleus	49.24	46.43
TraesCS2A01G100700.1	Wheat	nucleus	46.59	46.42
TraesCS2D01G100200.1	Wheat	nucleus	46.21	46.21
CDY02686	Canola	nucleus	49.24	45.94
AT5G17810.2	Thale cress	nucleus	46.59	45.9
Zm00001d022524_P001	Maize	nucleus	44.7	45.56
CDY29949	Canola	nucleus	49.62	45.33
CDY21173	Canola	nucleus	49.62	45.33
KRH64971	Soybean	nucleus	50.0	44.75
CDY66087	Canola	nucleus	47.35	44.64
AT3G03660.3	Thale cress	nucleus, plastid	52.27	42.33
TraesCS4D01G176400.1	Wheat	nucleus	47.35	40.85
TraesCS4A01G130200.1	Wheat	nucleus	47.35	40.72
Bra031980.1-P	Field mustard	nucleus	49.62	40.68
TraesCS4B01G174400.1	Wheat	nucleus	47.35	40.45
CDY50656	Canola	nucleus	51.52	40.12
CDY51756	Canola	plastid	49.24	39.88
GSMUA_Achr10P...	Banana	nucleus	40.15	39.85
TraesCS3B01G087800.1	Wheat	nucleus	39.39	39.85
GSMUA_Achr3P09460_001	Banana	nucleus	48.11	39.69
KXG39473	Sorghum	nucleus	46.97	39.49
TraesCS3D01G073300.1	Wheat	nucleus	39.02	39.46
TraesCS3A01G073500.1	Wheat	nucleus	38.64	39.23
Zm00001d047559_P001	Maize	nucleus	46.59	39.05
HORVU3Hr1G013290.3	Barley	nucleus	38.26	38.7
Zm00001d028986_P001	Maize	nucleus	46.59	38.08
KXG24798	Sorghum	nucleus	39.77	38.04
Os08t0242400-01	Rice	nucleus	40.91	38.03
CDY72488	Canola	nucleus, plastid	35.23	37.65
GSMUA_Achr6P15910_001	Banana	nucleus	44.7	37.22
GSMUA_Achr5P27730_001	Banana	nucleus	43.94	37.18
OQU90491	Sorghum	nucleus	35.23	35.77
HORVU3Hr1G013330.1	Barley	nucleus	26.14	35.57
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	47.73	34.71
Zm00001d024410_P001	Maize	nucleus	38.64	34.69
Os03t0325600-01	Rice	nucleus	45.83	33.99
HORVU4Hr1G051530.5	Barley	nucleus	36.74	28.12
GSMUA_Achr8P01590_001	Banana	nucleus	43.94	27.62
Solyc02g077390.1.1	Tomato	nucleus	34.85	25.7
Solyc03g096300.2.1	Tomato	nucleus	11.36	18.99
Solyc02g082670.2.1	Tomato	nucleus	16.29	15.69
Solyc06g076000.1.1	Tomato	nucleus	14.02	15.42
Solyc11g072790.1.1	Tomato	nucleus	12.12	15.31
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	11.36	15.23
Solyc02g083950.2.1	Tomato	nucleus	15.53	15.07
Solyc04g078650.2.1	Tomato	nucleus, plastid	12.12	13.22
Solyc03g118770.2.1	Tomato	nucleus	15.91	10.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K4C909	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF185
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g072890.1	EnsemblPlants:Solyc06g072890.1.1	UniParc:UPI0002765BB3	SEG:seg

Description

No Description!

Coordinates

chr6:+:44944174..44945630

Molecular Weight (calculated)

29128.3 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.128

Length

264 amino acids

Sequence
(BLAST)

001: MIIPFFDVIL EFYLFHSAMD DDSSSSSQSC ERNETVRSRW NPKPEQIVIL ESIFNSGMVN PRKDETVRIR KMLEQFGAVG DANVFYWFQN RRSRSRRRQR
101: QIQASLSAVS NSNEEQSARS SDGGAIQFQT NFVPSSVSSS SSSLGGVVGN ANDGLFLFSG PMGIDQNSSI TSILCSPTDN SNLNCSSSGF ITVFINGVAA
201: QVPRGPLDMK AMFGPEDLVL YHSSGVPLPV NEYGFVVQSL QHGESYFLAC PCILLYTHVT LYIL

Best Arabidopsis Sequence Match ( AT3G03660.1 )
(BLAST)

001: MDQEQTPHSP TRHSRSPPSS ASGSTSAEPV RSRWSPKPEQ ILILESIFHS GMVNPPKEET VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA
101: AAADATTNTC DQTMMVSNSL PHHSGSDLGF GGCSTSSNYL FASSSSSYGG GCDNQSNSGM ENLLTMSGQM SYHEATHHHY QNHSSNVTSI LCPSDQNSNF
201: QYQQGAITVF INGVPTEVTR GGIDMKATFG EDLVLVHSSG VPLPTDEFGF LMHSLQHGEA YFLVPRQT

Arabidopsis Description

WOX11WUSCHEL related homeobox 11 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LND8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.