Factsheet for Bra002108.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38461	Canola	nucleus	97.44	97.08
CDY16883	Canola	nucleus	97.44	96.38
Bra023638.1-P	Field mustard	nucleus	85.71	85.09
AT5G17810.2	Thale cress	nucleus	74.36	75.75
Bra036446.1-P	Field mustard	nucleus	63.74	65.66
VIT_08s0056g01200.t01	Wine grape	nucleus	47.62	55.08
Bra031980.1-P	Field mustard	nucleus	63.74	54.04
PGSC0003DMT400069529	Potato	nucleus	46.89	52.24
Solyc06g072890.1.1	Tomato	nucleus	47.99	49.62
Os07t0684900-01	Rice	nucleus	45.05	46.95
TraesCS2B01G117900.1	Wheat	nucleus	44.69	46.74
GSMUA_Achr10P...	Banana	nucleus	41.39	46.31
KRG94925	Soybean	nucleus	47.25	46.07
TraesCS2A01G100700.1	Wheat	nucleus	44.69	46.04
Zm00001d022524_P001	Maize	nucleus	43.59	45.95
TraesCS2D01G100200.1	Wheat	nucleus	44.32	45.83
KRH64971	Soybean	nucleus	47.62	44.07
TraesCS4B01G174400.1	Wheat	nucleus	47.25	41.75
TraesCS4D01G176400.1	Wheat	nucleus	46.52	41.5
TraesCS4A01G130200.1	Wheat	nucleus	46.52	41.37
KXG39473	Sorghum	nucleus	46.15	40.13
Zm00001d047559_P001	Maize	nucleus	46.15	40.0
Os08t0242400-01	Rice	nucleus	41.03	39.44
TraesCS3A01G073500.1	Wheat	nucleus	37.36	39.23
TraesCS3D01G073300.1	Wheat	nucleus	37.36	39.08
HORVU3Hr1G013290.3	Barley	nucleus	36.63	38.31
Zm00001d028986_P001	Maize	nucleus	45.05	38.08
OQU90491	Sorghum	nucleus	36.26	38.08
TraesCS3B01G087800.1	Wheat	nucleus	36.26	37.93
KXG24798	Sorghum	nucleus	38.1	37.68
GSMUA_Achr10P...	Banana	nucleus	36.63	37.59
GSMUA_Achr3P09460_001	Banana	nucleus	43.96	37.5
GSMUA_Achr6P15910_001	Banana	nucleus	43.22	37.22
HORVU3Hr1G013330.1	Barley	nucleus	26.01	36.6
GSMUA_Achr5P27730_001	Banana	nucleus	39.93	34.94
Os03t0325600-01	Rice	nucleus	45.05	34.55
Zm00001d024410_P001	Maize	nucleus	36.63	34.01
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	43.59	32.78
HORVU4Hr1G051530.5	Barley	nucleus	36.26	28.7
GSMUA_Achr8P01590_001	Banana	nucleus	42.86	27.86
Bra022008.1-P	Field mustard	nucleus	31.14	27.6
Bra005464.1-P	Field mustard	nucleus	33.33	23.33
Bra022960.1-P	Field mustard	nucleus	32.23	22.39
Bra012245.1-P	Field mustard	nucleus	10.26	21.05
Bra025839.1-P	Field mustard	nucleus	12.82	17.24
Bra028749.1-P	Field mustard	nucleus	9.89	15.52
Bra035688.1-P	Field mustard	nucleus	12.82	14.96
Bra011623.1-P	Field mustard	nucleus	13.92	14.73
Bra017720.1-P	Field mustard	nucleus	14.29	14.72
Bra009132.1-P	Field mustard	nucleus	10.26	14.58
Bra010531.1-P	Field mustard	nucleus	11.72	13.56
Bra000484.1-P	Field mustard	nucleus	10.99	13.27
Bra014055.1-P	Field mustard	nucleus	12.45	13.23
Bra037245.1-P	Field mustard	nucleus	14.65	12.86
Bra032212.1-P	Field mustard	nucleus	11.72	12.75
Bra026791.1-P	Field mustard	nucleus	12.09	12.74
Bra034855.1-P	Field mustard	mitochondrion	6.59	12.59
Bra039894.1-P	Field mustard	nucleus	13.92	12.58
Bra017448.1-P	Field mustard	nucleus	12.45	12.32
Bra024485.1-P	Field mustard	nucleus	13.19	12.24
Bra020321.1-P	Field mustard	nucleus	8.42	11.56
Bra002576.1-P	Field mustard	nucleus	8.79	11.43
Bra001694.1-P	Field mustard	nucleus	13.55	10.48
Bra022267.1-P	Field mustard	nucleus	13.19	10.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra002108	EnsemblPlants:Bra002108.1	EnsemblPlants:Bra002108.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4CD27	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF185	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002543B40
SEG:seg	:	:	:	:	:

Description

AT5G17810 (E=6e-078) WOX12 | WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor

Coordinates

chrA10:+:11406575..11407564

Molecular Weight (calculated)

30244.2 Da

IEP (calculated)

6.571

GRAVY (calculated)

-0.550

Length

273 amino acids

Sequence
(BLAST)

001: MDQEGSPQSR QGRSPSATTN STEPVRTRWS PKPEQILILE SIFNSGIVNP PKDETVRIRK MLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ LQAANAAAIA
101: TRGVEDPQHM TTMSMHHPYR NNEIDLGFGS CSNSSANYLF NESSSQVSSF LLGLSSSSTN GGCESNNGMG DLFTMYGHES DHHHFHHPQH SSNDASISSP
201: SDQNSSIHYQ QGLMTVFING VPTEVTNGAI DMKAMFGEDL VLLHSSGLPL PTDEFGFLIS LQHGQSYFLT ILC

Best Arabidopsis Sequence Match ( AT5G17810.3 )
(BLAST)

001: MNQEGASHSP SSTSTEPVRA RWSPKPEQIL ILESIFNSGT VNPPKDETVR IRKMLEKFGA VGDANVFYWF QNRRSRSRRR HRQLLAATTA AATSIGAEDH
101: QHMTAMSMHQ YPCSNNEIDL GFGSCSNLSA NYFLNGSSSS QIPSFFLGLS SSSGGCENNN GMENLFKMYG HESDHNHQQQ HHSSNAASVL NPSDQNSNSQ
201: YEQGFMTVFI NGVPMEVTKG AIDMKTMFGD DSVLLHSSGL PLPTDEFGFL MHSLQHGQTY FLVPRQT

Arabidopsis Description

WOX12WUSCHEL-related homeobox 12 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.