Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41648 | Canola | nucleus | 68.64 | 94.74 |
| CDY24814 | Canola | nucleus | 93.22 | 92.05 |
| Bra011623.1-P | Field mustard | nucleus | 82.2 | 75.19 |
| Bra017720.1-P | Field mustard | nucleus | 80.08 | 71.32 |
| AT4G35550.1 | Thale cress | nucleus | 80.93 | 71.27 |
| VIT_04s0044g00150.t01 | Wine grape | nucleus | 54.24 | 53.56 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 36.44 | 52.12 |
| VIT_04s0044g00160.t01 | Wine grape | nucleus | 51.69 | 51.69 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 47.88 | 47.68 |
| Bra012245.1-P | Field mustard | nucleus | 26.69 | 47.37 |
| PGSC0003DMT400003980 | Potato | nucleus | 54.66 | 46.91 |
| Solyc02g082670.2.1 | Tomato | nucleus | 54.24 | 46.72 |
| KRH70496 | Soybean | nucleus | 50.42 | 45.42 |
| KRH01611 | Soybean | nucleus | 50.42 | 44.74 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 42.8 | 43.16 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 38.14 | 40.91 |
| Bra025839.1-P | Field mustard | nucleus | 35.17 | 40.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.31 | 40.14 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 45.76 | 38.16 |
| Bra028749.1-P | Field mustard | nucleus | 11.86 | 16.09 |
| Bra009132.1-P | Field mustard | nucleus | 12.29 | 15.1 |
| Bra034855.1-P | Field mustard | mitochondrion | 8.47 | 13.99 |
| Bra014055.1-P | Field mustard | nucleus | 14.41 | 13.23 |
| Bra036446.1-P | Field mustard | nucleus | 14.83 | 13.21 |
| Bra032212.1-P | Field mustard | nucleus | 13.56 | 12.75 |
| Bra035688.1-P | Field mustard | nucleus | 12.29 | 12.39 |
| Bra022008.1-P | Field mustard | nucleus | 15.68 | 12.01 |
| Bra023638.1-P | Field mustard | nucleus | 13.98 | 12.0 |
| Bra000484.1-P | Field mustard | nucleus | 11.44 | 11.95 |
| Bra002108.1-P | Field mustard | nucleus | 13.56 | 11.72 |
| Bra017448.1-P | Field mustard | nucleus | 13.56 | 11.59 |
| Bra002576.1-P | Field mustard | nucleus | 9.75 | 10.95 |
| Bra024485.1-P | Field mustard | nucleus | 13.14 | 10.54 |
| Bra026791.1-P | Field mustard | nucleus | 11.44 | 10.42 |
| Bra031980.1-P | Field mustard | nucleus | 13.98 | 10.25 |
| Bra020321.1-P | Field mustard | nucleus | 8.47 | 10.05 |
| Bra005464.1-P | Field mustard | nucleus | 16.53 | 10.0 |
| HORVU1Hr1G087940.1 | Barley | cytosol, plasma membrane, plastid | 10.17 | 9.64 |
| Bra039894.1-P | Field mustard | nucleus | 12.29 | 9.6 |
| Bra022960.1-P | Field mustard | nucleus | 15.68 | 9.41 |
| Bra022267.1-P | Field mustard | nucleus | 13.98 | 9.4 |
| Bra001694.1-P | Field mustard | nucleus | 13.98 | 9.35 |
| Bra037245.1-P | Field mustard | nucleus | 12.29 | 9.32 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | EnsemblPlantsGene:Bra010531 | EnsemblPlants:Bra010531.1 | EnsemblPlants:Bra010531.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M4D231 | PFAM:PF00046 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002545E2F |
| SEG:seg | : | : | : | : | : |
Description
AT4G35550 (E=3e-084) HB-4, WOX13, ATWOX13 | WOX13 (WUSCHEL-RELATED HOMEOBOX 13); DNA binding / transcription factor
Coordinates
chrA08:+:15008117..15009102
Molecular Weight (calculated)
26908.5 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.972
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MMELDNQQQP NPMKVMTDEQ LETLRKQIAI YATICERLVE MHKTLTSQQD LAAGGRMGGL YTDTSICQKM TARQRWTPTP MQLQILERLF DQDTGTPSKQ
101: KIKDLTEELS QHGQIAEQNI CNWFQNRRAR SKRKQHCGVG SSNNKNGEGE VETETETLNE KRKRPESLLV QTDGNNNNND IGTATATSPR PEDLCFQSPE
201: MSSDLHLLGV QSNTRDEHLV ESYNLYDHVE DYDMSG
101: KIKDLTEELS QHGQIAEQNI CNWFQNRRAR SKRKQHCGVG SSNNKNGEGE VETETETLNE KRKRPESLLV QTDGNNNNND IGTATATSPR PEDLCFQSPE
201: MSSDLHLLGV QSNTRDEHLV ESYNLYDHVE DYDMSG
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Arabidopsis Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.