Factsheet for Bra022008.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48780	Canola	nucleus	98.7	95.0
CDX87744	Canola	nucleus	96.75	93.12
Os05t0564500-00	Rice	mitochondrion, nucleus, peroxisome	17.53	83.08
Os07t0533201-00	Rice	mitochondrion, nucleus, peroxisome	17.53	83.08
AT5G45980.1	Thale cress	nucleus	68.83	65.23
HORVU1Hr1G087950.1	Barley	nucleus	19.48	46.51
Solyc02g077390.1.1	Tomato	nucleus	41.23	35.47
PGSC0003DMT400027850	Potato	nucleus	37.99	35.14
Bra005464.1-P	Field mustard	nucleus	43.83	34.62
KRH30862	Soybean	nucleus	44.16	34.0
Bra022960.1-P	Field mustard	nucleus	42.86	33.59
KRH32713	Soybean	nucleus	43.18	33.0
KRH50138	Soybean	nucleus	41.56	32.99
KRH20358	Soybean	nucleus	41.56	32.9
VIT_10s0003g00560.t01	Wine grape	nucleus	43.18	32.28
Bra002108.1-P	Field mustard	nucleus	27.6	31.14
GSMUA_Achr9P06660_001	Banana	nucleus	38.64	30.75
Bra036446.1-P	Field mustard	nucleus	25.97	30.19
Bra023638.1-P	Field mustard	nucleus	25.97	29.09
GSMUA_Achr8P27170_001	Banana	nucleus	38.96	26.85
Bra031980.1-P	Field mustard	nucleus	26.3	25.16
TraesCS1A01G399400.1	Wheat	nucleus	33.44	21.19
TraesCS1D01G406900.1	Wheat	nucleus	33.44	21.19
KXG22537	Sorghum	plastid	34.09	21.17
Zm00001d039017_P001	Maize	nucleus	33.77	21.1
Os01t0667400-02	Rice	plastid	35.39	20.45
TraesCS1B01G427400.1	Wheat	nucleus, plastid	32.14	20.41
Bra028749.1-P	Field mustard	nucleus	11.36	20.11
TraesCS3D01G244300.1	Wheat	nucleus, plastid	33.44	20.08
TraesCS3A01G247200.1	Wheat	nucleus, plastid	33.44	20.0
TraesCS3B01G272200.1	Wheat	nucleus, plastid	33.44	20.0
HORVU3Hr1G060950.1	Barley	nucleus, plastid	33.44	19.96
Bra012245.1-P	Field mustard	nucleus	8.44	19.55
OQU87296	Sorghum	plastid	33.44	19.32
Bra009132.1-P	Field mustard	nucleus	12.01	19.27
Bra025839.1-P	Field mustard	nucleus	12.34	18.72
Bra034855.1-P	Field mustard	mitochondrion	8.12	17.48
Bra000484.1-P	Field mustard	nucleus	12.34	16.81
Bra035688.1-P	Field mustard	nucleus	12.66	16.67
Bra011623.1-P	Field mustard	nucleus	13.64	16.28
Bra017720.1-P	Field mustard	nucleus	13.96	16.23
Bra026791.1-P	Field mustard	nucleus	13.64	16.22
Bra010531.1-P	Field mustard	nucleus	12.01	15.68
Bra024485.1-P	Field mustard	nucleus	14.94	15.65
Bra017448.1-P	Field mustard	nucleus	13.96	15.58
Bra014055.1-P	Field mustard	nucleus	12.99	15.56
Bra032212.1-P	Field mustard	nucleus	12.66	15.54
Bra037245.1-P	Field mustard	nucleus	15.58	15.43
Bra039894.1-P	Field mustard	nucleus	14.94	15.23
Bra002576.1-P	Field mustard	nucleus	9.74	14.29
Bra020321.1-P	Field mustard	nucleus	8.77	13.57
Bra001694.1-P	Field mustard	nucleus	12.99	11.33
Bra022267.1-P	Field mustard	nucleus	12.66	11.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra022008	EnsemblPlants:Bra022008.1	EnsemblPlants:Bra022008.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008284	GO:GO:0009653
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0030010	GO:GO:0048825
GO:GO:0090451	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4DZR1	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002545B76
SEG:seg	:	:	:	:	:

Description

AT5G45980 (E=3e-108) WOX8, STPL | WOX8 (WUSCHEL RELATED HOMEOBOX 8); DNA binding / transcription factor

Coordinates

chrA02:+:18481607..18483157

Molecular Weight (calculated)

34254.6 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.473

Length

308 amino acids

Sequence
(BLAST)

001: MFKSKPCNKH HHRDMETPSS MPYSNCNTPS PFSSDRVPDP KPRWNPKPEQ IRILESIFNS GIVNPPREEI QRIRTRLQEY GQIGDANVFY WFQNRKSRAK
101: HKLRVLKKNP KMLGCNPSKT RKEKIITPND NPTDPCFGLV NHETGLFPGQ NNELVITEPA SFLYPDDNNP SLTQSGFGFG GFVVPVVAEE RLELAGTSNG
201: LNMNIPEIDF GGGENGYFPN SVPVTVPLTI NQSQVSSGGG DIGDYVSPVR LTVFINDMPF DVAAGLFNVK EAFGNNAMLI NSFGQPILTD EFGVTFQPLQ
301: NGAVYYLL

Best Arabidopsis Sequence Match ( AT5G45980.1 )
(BLAST)

001: MSSSNKNWPS MFKSKPCNNN HHHQHEIDTP SYMHYSNCNL SSSFSSDRIP DPKPRWNPKP EQIRILESIF NSGTINPPRE EIQRIRIRLQ EYGQIGDANV
101: FYWFQNRKSR AKHKLRVHHK SPKMSKKDKT VIPSTDADHC FGFVNQETGL YPVQNNELVV TEPAGFLFPV HNDPSAAQSA FGFGDFVVPV VTEEGMAFST
201: VNNGVNLETN ENFDKIPAIN LYGGDGNGGG NCFPPLTVPL TINQSQEKRD VGLSGGEDVG DNVYPVRMTV FINEMPIEVV SGLFNVKAAF GNDAVLINSF
301: GQPILTDEFG VTYQPLQNGA IYYLI

Arabidopsis Description

WOX8WUSCHEL-related homeobox 8 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.