Factsheet for Bra005464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17211	Canola	nucleus	100.0	100.0
CDY69228	Canola	nucleus	95.9	95.9
AT2G33880.2	Thale cress	nucleus	85.13	85.57
Bra022960.1-P	Field mustard	nucleus	81.03	80.41
KRH30862	Soybean	nucleus	46.67	45.5
KRH32713	Soybean	nucleus	46.41	44.91
VIT_10s0003g00560.t01	Wine grape	nucleus	47.18	44.66
KRH20358	Soybean	nucleus	44.1	44.22
Solyc02g077390.1.1	Tomato	nucleus	40.51	44.13
KRH50138	Soybean	nucleus	43.85	44.07
Bra022008.1-P	Field mustard	nucleus	34.62	43.83
PGSC0003DMT400027850	Potato	nucleus	35.13	41.14
Bra036446.1-P	Field mustard	nucleus	22.82	33.58
Bra002108.1-P	Field mustard	nucleus	23.33	33.33
Bra023638.1-P	Field mustard	nucleus	22.82	32.36
Bra031980.1-P	Field mustard	nucleus	24.62	29.81
Bra025839.1-P	Field mustard	nucleus	11.54	22.17
Bra012245.1-P	Field mustard	nucleus	7.18	21.05
Bra028749.1-P	Field mustard	nucleus	9.23	20.69
Bra034855.1-P	Field mustard	mitochondrion	7.18	19.58
Bra009132.1-P	Field mustard	nucleus	9.49	19.27
Bra032212.1-P	Field mustard	nucleus	11.79	18.33
Bra039894.1-P	Field mustard	nucleus	13.85	17.88
Bra011623.1-P	Field mustard	nucleus	11.54	17.44
Bra014055.1-P	Field mustard	nucleus	11.28	17.12
Bra026791.1-P	Field mustard	nucleus	11.28	16.99
Bra017720.1-P	Field mustard	nucleus	11.54	16.98
Bra037245.1-P	Field mustard	nucleus	13.33	16.72
Bra024485.1-P	Field mustard	nucleus	12.56	16.67
Bra010531.1-P	Field mustard	nucleus	10.0	16.53
Bra035688.1-P	Field mustard	nucleus	9.23	15.38
Bra000484.1-P	Field mustard	nucleus	8.72	15.04
Bra017448.1-P	Field mustard	nucleus	10.26	14.49
Bra001694.1-P	Field mustard	nucleus	13.08	14.45
Bra022267.1-P	Field mustard	nucleus	12.31	13.68
Bra002576.1-P	Field mustard	nucleus	6.67	12.38
Bra020321.1-P	Field mustard	nucleus	6.15	12.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra005464	EnsemblPlants:Bra005464.1	EnsemblPlants:Bra005464.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M4CMM6	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308	SMART:SM00389
SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI0002547302	SEG:seg	:	:

Description

AT2G33880 (E=2e-145) WOX9, HB-3, STIP | HB-3; transcription factor

Coordinates

chrA05:+:5636162..5637739

Molecular Weight (calculated)

43344.3 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.557

Length

390 amino acids

Sequence
(BLAST)

001: MASSNRHWPS MFKSKPHHHQ WQHDMNSPLL PSPASHRSSP FSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGLVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPPPQ PQPQPLSSAS SSSSSSSSSS KSTKLPKTKN KKNTNNTNLS LGGSQMMGMF PPEASFLFPA STVGGFEGIP
201: VSSQLGFFPG EMVEQPKQAP PTVEPCTGIL LSEIMNGSAG YGTHNHQQLS EKEDEEMRMK MLQQPQICYA ATSDQISSYN NNNNNIMLHV PPTASTTTTS
301: NPLAIVPSTL DQLQVQAGAR IRVFINEMEF EVSPGQFNVR DAFGEEVVLI NSAGQPIVTD EYGVAIHPLQ HGASYYLVLF PLLASLFFFN

Best Arabidopsis Sequence Match ( AT2G33880.2 )
(BLAST)

001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLVLF PLYFPLLY

Arabidopsis Description

WOX9WOX9A [Source:UniProtKB/TrEMBL;Acc:A0A178VQA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.