Factsheet for Bra023638.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66087	Canola	nucleus	97.45	95.71
CDY02686	Canola	nucleus	96.0	93.29
Bra002108.1-P	Field mustard	nucleus	85.09	85.71
AT5G17810.2	Thale cress	nucleus	74.91	76.87
Bra036446.1-P	Field mustard	nucleus	63.27	65.66
VIT_08s0056g01200.t01	Wine grape	nucleus	47.27	55.08
Bra031980.1-P	Field mustard	nucleus	62.55	53.42
PGSC0003DMT400069529	Potato	nucleus	46.18	51.84
Solyc06g072890.1.1	Tomato	nucleus	46.55	48.48
GSMUA_Achr10P...	Banana	nucleus	41.09	46.31
Os07t0684900-01	Rice	nucleus	43.64	45.8
KRG94925	Soybean	nucleus	46.55	45.71
TraesCS2B01G117900.1	Wheat	nucleus	43.27	45.59
TraesCS2D01G100200.1	Wheat	nucleus	43.27	45.08
TraesCS2A01G100700.1	Wheat	nucleus	43.27	44.91
Zm00001d022524_P001	Maize	nucleus	42.18	44.79
KRH64971	Soybean	nucleus	47.27	44.07
TraesCS4A01G130200.1	Wheat	nucleus	44.73	40.07
TraesCS4D01G176400.1	Wheat	nucleus	44.36	39.87
KXG39473	Sorghum	nucleus	45.45	39.81
TraesCS4B01G174400.1	Wheat	nucleus	44.73	39.81
Zm00001d047559_P001	Maize	nucleus	45.45	39.68
TraesCS3D01G073300.1	Wheat	nucleus	37.09	39.08
TraesCS3A01G073500.1	Wheat	nucleus	36.73	38.85
Os08t0242400-01	Rice	nucleus	40.0	38.73
Zm00001d028986_P001	Maize	nucleus	44.73	38.08
KXG24798	Sorghum	nucleus	38.18	38.04
TraesCS3B01G087800.1	Wheat	nucleus	36.0	37.93
GSMUA_Achr10P...	Banana	nucleus	36.36	37.59
HORVU3Hr1G013290.3	Barley	nucleus	35.64	37.55
GSMUA_Achr3P09460_001	Banana	nucleus	43.64	37.5
OQU90491	Sorghum	nucleus	34.91	36.92
GSMUA_Achr6P15910_001	Banana	nucleus	41.45	35.96
GSMUA_Achr5P27730_001	Banana	nucleus	40.0	35.26
HORVU3Hr1G013330.1	Barley	nucleus	24.36	34.54
Zm00001d024410_P001	Maize	nucleus	36.36	34.01
Os03t0325600-01	Rice	nucleus	44.0	33.99
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	41.82	31.68
GSMUA_Achr8P01590_001	Banana	nucleus	42.91	28.1
HORVU4Hr1G051530.5	Barley	nucleus	34.91	27.83
Bra022008.1-P	Field mustard	nucleus	29.09	25.97
Bra005464.1-P	Field mustard	nucleus	32.36	22.82
Bra012245.1-P	Field mustard	nucleus	10.55	21.8
Bra022960.1-P	Field mustard	nucleus	30.18	21.12
Bra025839.1-P	Field mustard	nucleus	12.73	17.24
Bra028749.1-P	Field mustard	nucleus	10.18	16.09
Bra011623.1-P	Field mustard	nucleus	14.18	15.12
Bra009132.1-P	Field mustard	nucleus	10.55	15.1
Bra017720.1-P	Field mustard	nucleus	14.18	14.72
Bra035688.1-P	Field mustard	nucleus	12.36	14.53
Bra010531.1-P	Field mustard	nucleus	12.0	13.98
Bra034855.1-P	Field mustard	mitochondrion	6.91	13.29
Bra014055.1-P	Field mustard	nucleus	12.36	13.23
Bra037245.1-P	Field mustard	nucleus	14.91	13.18
Bra017448.1-P	Field mustard	nucleus	13.09	13.04
Bra000484.1-P	Field mustard	nucleus	10.55	12.83
Bra024485.1-P	Field mustard	nucleus	13.45	12.59
Bra039894.1-P	Field mustard	nucleus	13.82	12.58
Bra026791.1-P	Field mustard	nucleus	11.64	12.36
Bra032212.1-P	Field mustard	nucleus	11.27	12.35
Bra020321.1-P	Field mustard	nucleus	8.36	11.56
Bra002576.1-P	Field mustard	nucleus	8.0	10.48
Bra001694.1-P	Field mustard	nucleus	12.73	9.92
Bra022267.1-P	Field mustard	nucleus	12.36	9.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra023638	EnsemblPlants:Bra023638.1	EnsemblPlants:Bra023638.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4E4D5	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF185	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000254313B
SEG:seg	:	:	:	:	:

Description

AT5G17810 (E=1e-083) WOX12 | WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor

Coordinates

chrA02:-:4318615..4320422

Molecular Weight (calculated)

30437.2 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.663

Length

275 amino acids

Sequence
(BLAST)

001: MDQEGSSQSP TGQGRSPSAP SNSTAPARSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEQFGAV GDTNVFYWFQ NRRSRSRRRQ RQLQAATAAA
101: VTSRGAEDQQ HMTTMSMHHP YRNNEINLGF GSCSNSSANY FFNDPSSQVS SFLLGHSSSS SNGGCESNNG MENLFTMYGH ESDHPHLHQH SSNDATISNP
201: SDQNSSFHYQ QGLMTVFING VPTEVTEGAI DMKAMFGEDL ALMHSSGLPL PIDEFGFLMH SLQHGQSYFL VPRQT

Best Arabidopsis Sequence Match ( AT5G17810.3 )
(BLAST)

001: MNQEGASHSP SSTSTEPVRA RWSPKPEQIL ILESIFNSGT VNPPKDETVR IRKMLEKFGA VGDANVFYWF QNRRSRSRRR HRQLLAATTA AATSIGAEDH
101: QHMTAMSMHQ YPCSNNEIDL GFGSCSNLSA NYFLNGSSSS QIPSFFLGLS SSSGGCENNN GMENLFKMYG HESDHNHQQQ HHSSNAASVL NPSDQNSNSQ
201: YEQGFMTVFI NGVPMEVTKG AIDMKTMFGD DSVLLHSSGL PLPTDEFGFL MHSLQHGQTY FLVPRQT

Arabidopsis Description

WOX12WUSCHEL-related homeobox 12 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.