Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G176400.1 | Wheat | nucleus | 96.42 | 96.73 |
| TraesCS4B01G174400.1 | Wheat | nucleus | 95.77 | 95.15 |
| KXG39473 | Sorghum | nucleus | 82.41 | 80.57 |
| Zm00001d047559_P001 | Maize | nucleus | 79.48 | 77.46 |
| Zm00001d028986_P001 | Maize | nucleus | 80.46 | 76.47 |
| Os03t0325600-01 | Rice | nucleus | 81.43 | 70.22 |
| HORVU4Hr1G051530.5 | Barley | nucleus | 74.27 | 66.09 |
| TraesCS2A01G100700.1 | Wheat | nucleus | 56.35 | 65.28 |
| GSMUA_Achr10P... | Banana | nucleus | 50.81 | 63.93 |
| VIT_08s0056g01200.t01 | Wine grape | nucleus | 41.69 | 54.24 |
| Bra036446.1-P | Field mustard | nucleus | 43.32 | 50.19 |
| GSMUA_Achr10P... | Banana | nucleus | 43.32 | 50.0 |
| KRG94925 | Soybean | nucleus | 45.6 | 50.0 |
| PGSC0003DMT400069529 | Potato | nucleus | 39.41 | 49.39 |
| Solyc06g072890.1.1 | Tomato | nucleus | 40.72 | 47.35 |
| CDY21173 | Canola | nucleus | 44.3 | 47.06 |
| CDY29949 | Canola | nucleus | 44.3 | 47.06 |
| CDY38461 | Canola | nucleus | 41.69 | 46.72 |
| GSMUA_Achr6P15910_001 | Banana | nucleus | 48.21 | 46.69 |
| AT5G17810.2 | Thale cress | nucleus | 40.72 | 46.64 |
| Bra002108.1-P | Field mustard | nucleus | 41.37 | 46.52 |
| KRH64971 | Soybean | nucleus | 44.3 | 46.1 |
| CDY16883 | Canola | nucleus | 41.37 | 46.01 |
| GSMUA_Achr5P27730_001 | Banana | nucleus | 46.58 | 45.83 |
| TraesCS3A01G073500.1 | Wheat | nucleus | 38.44 | 45.38 |
| Bra023638.1-P | Field mustard | nucleus | 40.07 | 44.73 |
| CDY02686 | Canola | nucleus | 41.04 | 44.52 |
| CDY66087 | Canola | nucleus | 39.09 | 42.86 |
| AT3G03660.3 | Thale cress | nucleus, plastid | 43.97 | 41.41 |
| GSMUA_Achr9P05010_001 | Banana | nucleus, plastid | 47.88 | 40.5 |
| CDY72488 | Canola | nucleus, plastid | 32.57 | 40.49 |
| Bra031980.1-P | Field mustard | nucleus | 42.35 | 40.37 |
| CDY51756 | Canola | plastid | 42.67 | 40.18 |
| CDY50656 | Canola | nucleus | 42.67 | 38.64 |
| GSMUA_Achr8P01590_001 | Banana | nucleus | 45.93 | 33.57 |
| TraesCS1A01G399400.1 | Wheat | nucleus | 25.73 | 16.26 |
| TraesCS2A01G514000.1 | Wheat | plastid | 12.38 | 16.24 |
| TraesCS5A01G157300.1 | Wheat | nucleus | 12.7 | 16.18 |
| TraesCS3A01G368100.1 | Wheat | nucleus | 11.07 | 16.04 |
| TraesCS3A01G341700.1 | Wheat | nucleus | 13.68 | 15.85 |
| TraesCS1A01G052000.1 | Wheat | nucleus, plastid | 12.38 | 14.45 |
| TraesCS2A01G491900.1 | Wheat | mitochondrion, plastid | 13.68 | 13.64 |
| TraesCS3A01G247200.1 | Wheat | nucleus, plastid | 22.8 | 13.59 |
| TraesCS3A01G358100.1 | Wheat | nucleus | 13.03 | 13.29 |
| TraesCS5A01G085000.1 | Wheat | nucleus | 13.03 | 12.58 |
| TraesCS3A01G358200.1 | Wheat | nucleus | 11.07 | 11.81 |
| TraesCS3A01G358400.1 | Wheat | nucleus | 10.75 | 11.38 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G130200.1 | EnsemblPlantsGene:TraesCS4A01G130200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF280 |
| PFAM:PF00046 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | MapMan:15.5.3.6 |
Description
No Description!
Coordinates
chr4A:-:170708415..170710951
Molecular Weight (calculated)
31540.0 Da
IEP (calculated)
8.207
GRAVY (calculated)
-0.173
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGSNSPDG QSSGGSPEER RSSGGRGAGE PVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA
101: AAAAAATAAA ASSANSLPAA SATIGLPSGT GSVHPMAIGG GASQYEQQAT SSSSSGSTGG SSLGPFAAHV AGVSGAGVGY LQASCGTSSP LASGLMADVD
201: SGGSDDLFAI SRQMGFVGSP AGSSSAAPNT AVQQQYYSCQ LPAAAITVFI NGVPMEVPRG PIDLRAMFGQ DVVLLHSTGT LLPVNDYGIL IQSLQMGESY
301: FLVSRQT
101: AAAAAATAAA ASSANSLPAA SATIGLPSGT GSVHPMAIGG GASQYEQQAT SSSSSGSTGG SSLGPFAAHV AGVSGAGVGY LQASCGTSSP LASGLMADVD
201: SGGSDDLFAI SRQMGFVGSP AGSSSAAPNT AVQQQYYSCQ LPAAAITVFI NGVPMEVPRG PIDLRAMFGQ DVVLLHSTGT LLPVNDYGIL IQSLQMGESY
301: FLVSRQT
001: MDQEQTPHSP TRHSRSPPSS ASGSTSAEPV RSRWSPKPEQ ILILESIFHS GMVNPPKEET VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA
101: AAADATTNTC DQTMMVSNSL PHHSGSDLGF GGCSTSSNYL FGGSSQVPSF FLGLSSSPSS CSSSSSTSSS ASSSSSYGGG CDNQSNSGME NLLTMSGQMS
201: YHEATHHHYQ NHSSNVTSIL CPSDQNSNFQ YQQGAITVFI NGVPTEVTRG GIDMKATFGE DLVLVHSSGV PLPTDEFGFL MHSLQHGEAY FLVPRQT
101: AAADATTNTC DQTMMVSNSL PHHSGSDLGF GGCSTSSNYL FGGSSQVPSF FLGLSSSPSS CSSSSSTSSS ASSSSSYGGG CDNQSNSGME NLLTMSGQMS
201: YHEATHHHYQ NHSSNVTSIL CPSDQNSNFQ YQQGAITVFI NGVPTEVTRG GIDMKATFGE DLVLVHSSGV PLPTDEFGFL MHSLQHGEAY FLVPRQT
Arabidopsis Description
WOX11WUSCHEL related homeobox 11 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LND8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.