Factsheet for TraesCS3A01G247200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G244300.1	Wheat	nucleus, plastid	95.92	96.3
TraesCS3B01G272200.1	Wheat	nucleus, plastid	95.53	95.53
HORVU3Hr1G060950.1	Barley	nucleus, plastid	91.65	91.47
Os07t0533201-00	Rice	mitochondrion, nucleus, peroxisome	10.68	84.62
OQU87296	Sorghum	plastid	54.17	52.35
Os01t0667400-02	Rice	plastid	40.0	38.65
KRH30862	Soybean	nucleus	27.38	35.25
KRH32713	Soybean	nucleus	27.57	35.24
Solyc02g077390.1.1	Tomato	nucleus	23.88	34.36
GSMUA_Achr9P06660_001	Banana	nucleus	25.63	34.11
VIT_10s0003g00560.t01	Wine grape	nucleus	27.18	33.98
CDX87744	Canola	nucleus	20.97	33.75
KRH50138	Soybean	nucleus	25.24	33.51
Bra022008.1-P	Field mustard	nucleus	20.0	33.44
CDY48780	Canola	nucleus	20.78	33.44
KRH20358	Soybean	nucleus	25.05	33.16
AT5G45980.1	Thale cress	nucleus	20.58	32.62
TraesCS1A01G399400.1	Wheat	nucleus	30.29	32.1
PGSC0003DMT400027850	Potato	nucleus	20.58	31.83
GSMUA_Achr8P27170_001	Banana	nucleus	25.63	29.53
TraesCS3A01G073500.1	Wheat	nucleus	13.79	27.31
TraesCS2A01G100700.1	Wheat	nucleus	12.82	24.91
TraesCS4A01G130200.1	Wheat	nucleus	13.59	22.8
TraesCS5A01G157300.1	Wheat	nucleus	8.35	17.84
TraesCS3A01G368100.1	Wheat	nucleus	7.18	17.45
TraesCS1A01G052000.1	Wheat	nucleus, plastid	8.16	15.97
TraesCS3A01G341700.1	Wheat	nucleus	7.96	15.47
TraesCS2A01G514000.1	Wheat	plastid	6.99	15.38
TraesCS3A01G358100.1	Wheat	nucleus	8.54	14.62
TraesCS3A01G358200.1	Wheat	nucleus	7.77	13.89
TraesCS3A01G358400.1	Wheat	nucleus	7.77	13.79
TraesCS2A01G491900.1	Wheat	mitochondrion, plastid	8.16	13.64
TraesCS5A01G085000.1	Wheat	nucleus	8.16	13.21

Protein Annotations

EnsemblPlants:TraesCS3A01G247200.1	EnsemblPlantsGene:TraesCS3A01G247200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:465225412..465228551

Molecular Weight (calculated)

53731.2 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.205

Length

515 amino acids

Sequence
(BLAST)

001: MASPNSRQQQ QHWPSMFRSK HGSQVWQSQP DMTGSPPSLV SGSAAAAGHS FKAPFSSGPD QERNTDTKPR WNPRPEQIRI LETLFNSGLI NPTRDEIPRI
101: RMRLQEYGPV GDSNVFYWFQ NRKSRSKNKL RNAAARAAPV RACAPARQQA AAPYTPPPKQ FHPPKPPLFS PVAPTSSSSS SSDRSSGSSK PVKPAATQDM
201: SATAAMDLLS PLAAACHQQM HYQFGLGQTP VSTPAQAPAP APTLDEFVAT DVEPIFLQYP QGHCVSAGEL AAILGAQYMP VPAVQQPPVA SPAGMFLGLC
301: NDVAIGPTST GQRSSASAAG LGQYWSIGVD QLGLRKNSDP FLNNPVAKEE AYEDFTKTKL GLVQYGLGLT AAPATSAAAV LPPPASPDST AVTVASASAT
401: AELTSLFATT ATTDAISYNS NLQGPADDVG FAGAAAAAGA GATGVLGRGA AVVCFAGTSA ACSVPATHLD VKLYFGDGAV LFRCNGDRAE PLLVDDAGLT
501: VEPLQHGGVY YCVLI

Best Arabidopsis Sequence Match ( AT2G33880.1 )
(BLAST)

001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI

Arabidopsis Description

WOX9WOX9A [Source:UniProtKB/TrEMBL;Acc:A0A178VQA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.