Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0564500-00 | Rice | mitochondrion, nucleus, peroxisome | 17.42 | 89.23 |
| Os07t0533201-00 | Rice | mitochondrion, nucleus, peroxisome | 17.12 | 87.69 |
| Solyc02g077390.1.1 | Tomato | nucleus | 92.19 | 85.75 |
| KRH30862 | Soybean | nucleus | 54.05 | 45.0 |
| VIT_10s0003g00560.t01 | Wine grape | nucleus | 55.26 | 44.66 |
| HORVU1Hr1G087950.1 | Barley | nucleus | 17.12 | 44.19 |
| KRH32713 | Soybean | nucleus | 52.85 | 43.67 |
| KRH20358 | Soybean | nucleus | 50.45 | 43.19 |
| KRH50138 | Soybean | nucleus | 49.55 | 42.53 |
| Bra022008.1-P | Field mustard | nucleus | 35.14 | 37.99 |
| PGSC0003DMT400069529 | Potato | nucleus | 27.33 | 37.14 |
| GSMUA_Achr9P06660_001 | Banana | nucleus | 42.94 | 36.95 |
| AT5G45980.1 | Thale cress | nucleus | 36.04 | 36.92 |
| AT2G33880.2 | Thale cress | nucleus | 42.64 | 36.6 |
| CDY48780 | Canola | nucleus | 34.53 | 35.94 |
| CDX87744 | Canola | nucleus | 34.53 | 35.94 |
| CDY69228 | Canola | nucleus | 41.44 | 35.38 |
| CDY17211 | Canola | nucleus | 41.14 | 35.13 |
| Bra005464.1-P | Field mustard | nucleus | 41.14 | 35.13 |
| GSMUA_Achr8P27170_001 | Banana | nucleus | 46.85 | 34.9 |
| Bra022960.1-P | Field mustard | nucleus | 41.14 | 34.86 |
| CDX79549 | Canola | nucleus | 40.84 | 34.26 |
| PGSC0003DMT400016896 | Potato | mitochondrion | 9.61 | 29.09 |
| Zm00001d039017_P001 | Maize | nucleus | 37.24 | 25.15 |
| PGSC0003DMT400053435 | Potato | nucleus | 11.41 | 24.2 |
| KXG22537 | Sorghum | plastid | 36.04 | 24.19 |
| TraesCS1A01G399400.1 | Wheat | nucleus | 32.73 | 22.43 |
| TraesCS1D01G406900.1 | Wheat | nucleus | 32.43 | 22.22 |
| TraesCS1B01G427400.1 | Wheat | nucleus, plastid | 31.83 | 21.86 |
| Os01t0667400-02 | Rice | plastid | 34.53 | 21.58 |
| TraesCS3B01G272200.1 | Wheat | nucleus, plastid | 32.43 | 20.97 |
| HORVU3Hr1G060950.1 | Barley | nucleus, plastid | 32.43 | 20.93 |
| OQU87296 | Sorghum | plastid | 33.33 | 20.83 |
| TraesCS3D01G244300.1 | Wheat | nucleus, plastid | 31.83 | 20.66 |
| TraesCS3A01G247200.1 | Wheat | nucleus, plastid | 31.83 | 20.58 |
| PGSC0003DMT400065247 | Potato | mitochondrion | 12.01 | 20.0 |
| PGSC0003DMT400077947 | Potato | nucleus | 12.61 | 17.8 |
| PGSC0003DMT400003980 | Potato | nucleus | 14.11 | 17.09 |
| PGSC0003DMT400020662 | Potato | nucleus | 11.71 | 16.18 |
| PGSC0003DMT400009157 | Potato | nucleus | 13.81 | 16.03 |
| PGSC0003DMT400014464 | Potato | nucleus | 14.11 | 12.02 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M1AQ95 | PFAM:PF00046 | EnsemblPlantsGene:PGSC0003DMG400010725 | PGSC:PGSC0003DMG400010725 |
| EnsemblPlants:PGSC0003DMT400027850 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF308 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI0002960890 | SEG:seg | : | : | : | : |
Description
COMPOUND INFLORESCENCE [Source:PGSC_GENE;Acc:PGSC0003DMG400010725]
Coordinates
chr2:-:32855770..32857713
Molecular Weight (calculated)
37052.1 Da
IEP (calculated)
7.208
GRAVY (calculated)
-0.611
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSIIQQRP PCNPEERSPE PKPRWNPRPE QIRILEAIFN SGMVNPPRDE IRKIRAKLQE YGQVGDANVF YWFQNRKSRS KHKQRHLQAK AQQHQHQNNS
101: SHQPIITSSS SSSDKSSPNS LTFSIGTSNV MDLLNSPTSS VNQQNYNEFL SNEQPFFFTV QPPPVVPTHD HSTMSQGFCF PDSTTFSPHS SSSSSGLFLN
201: EWMGISQTPS NNSKKAENEK MNLQSQLMSY TVTSTASPLA STTIPTIGHI QGVAVDPNDA GPTRSTVFIN DVAFEVGIGP FNVREVFGED AVLIHSSGEP
301: LITNEWGITI QPLQHGAFYY LLRTSSIAST HHV
101: SHQPIITSSS SSSDKSSPNS LTFSIGTSNV MDLLNSPTSS VNQQNYNEFL SNEQPFFFTV QPPPVVPTHD HSTMSQGFCF PDSTTFSPHS SSSSSGLFLN
201: EWMGISQTPS NNSKKAENEK MNLQSQLMSY TVTSTASPLA STTIPTIGHI QGVAVDPNDA GPTRSTVFIN DVAFEVGIGP FNVREVFGED AVLIHSSGEP
301: LITNEWGITI QPLQHGAFYY LLRTSSIAST HHV
001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI
Arabidopsis Description
WOX9WOX9A [Source:UniProtKB/TrEMBL;Acc:A0A178VQA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.