Factsheet for PGSC0003DMT400077947

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076000.1.1	Tomato	nucleus	92.8	91.25
KRH23053	Soybean	nucleus	41.95	46.7
KRH29810	Soybean	nucleus	49.58	44.83
KRH10279	Soybean	nucleus	41.1	44.29
AT5G59340.1	Thale cress	nucleus	42.37	38.46
GSMUA_Achr10P...	Banana	nucleus	36.86	37.34
KRH24809	Soybean	nucleus	49.58	35.78
PGSC0003DMT400016896	Potato	mitochondrion	16.53	35.45
CDX80277	Canola	nucleus	29.66	33.33
CDY33030	Canola	nucleus	29.24	32.86
Bra002576.1-P	Field mustard	nucleus	29.24	32.86
PGSC0003DMT400053435	Potato	nucleus	19.92	29.94
CDY32648	Canola	nucleus	21.61	29.14
CDY02885	Canola	nucleus	23.73	28.14
Bra020321.1-P	Field mustard	nucleus	23.31	27.64
PGSC0003DMT400065247	Potato	mitochondrion	22.03	26.0
PGSC0003DMT400020662	Potato	nucleus	26.27	25.73
PGSC0003DMT400009157	Potato	nucleus	24.15	19.86
PGSC0003DMT400014464	Potato	nucleus	26.27	15.86
PGSC0003DMT400069529	Potato	nucleus	14.83	14.29
PGSC0003DMT400027850	Potato	nucleus	17.8	12.61
PGSC0003DMT400003980	Potato	nucleus	13.98	12.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102585727	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M1CZ36	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400030316	PGSC:PGSC0003DMG400030316
EnsemblPlants:PGSC0003DMT400077947	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF203	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI000296E265	RefSeq:XP_006350912.1	SEG:seg	:	:	:

Description

WOX2 [Source:PGSC_GENE;Acc:PGSC0003DMG400030316]

Coordinates

chr6:+:56520583..56522059

Molecular Weight (calculated)

26684.3 Da

IEP (calculated)

8.391

GRAVY (calculated)

-0.689

Length

236 amino acids

Sequence
(BLAST)

001: MSDNNMSVDM LTSGGTPVGC RWNPTKEQID LLESLYKQGI RTPSAEQIQQ ITGRLRAFGH IEGKNVFYWF QNHKARQRQK QKQDKFAYYN RFLHRTSVFP
101: PPNCPNVVCS PYYTAQNNLG FYQQYPSMII PGPGGFKRRA TCNQETLNLC EQNNITNANK EFINQETLNL FPLHPTGVLQ EKTTTTDSSS SSSTCVPHDH
201: QSSITTSNSV EANCFTDLGI GASDRPNPVF NFLCRN

Best Arabidopsis Sequence Match ( AT5G59340.1 )
(BLAST)

001: MENEVNAGTA SSSRWNPTKD QITLLENLYK EGIRTPSADQ IQQITGRLRA YGHIEGKNVF YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFYPPPCSN
101: VGCVSPYYLQ QASDHHMNQH GSVYTNDLLH RNNVMIPSGG YEKRTVTQHQ KQLSDIRTTA ATRMPISPSS LRFDRFALRD NCYAGEDINV NSSGRKTLPL
201: FPLQPLNASN ADGMGSSSFA LGSDSPVDCS SDGAGREQPF IDFFSGGSTS TRFDSNGNGL

Arabidopsis Description

WOX2WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.