Factsheet for PGSC0003DMT400065247

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	93.5	94.92
PGSC0003DMT400016896	Potato	mitochondrion	34.0	61.82
VIT_06s0004g03780.t01	Wine grape	nucleus	29.0	43.94
KRG99904	Soybean	nucleus	36.0	34.29
KRH49082	Soybean	nucleus	36.0	34.29
GSMUA_Achr5P29220_001	Banana	nucleus	34.0	34.0
PGSC0003DMT400053435	Potato	nucleus	25.0	31.85
Zm00001d010998_P001	Maize	nucleus	35.0	31.82
Bra035688.1-P	Field mustard	nucleus	35.5	30.34
CDY31716	Canola	nucleus	35.5	30.34
CDX95764	Canola	nucleus	33.0	29.73
CDX77191	Canola	nucleus	35.0	29.66
Bra000484.1-P	Field mustard	nucleus	33.5	29.65
CDX83299	Canola	nucleus	33.5	29.65
AT2G28610.1	Thale cress	nucleus	36.0	29.51
Zm00001d035535_P001	Maize	nucleus	36.5	28.29
OQU77281	Sorghum	mitochondrion, nucleus	36.5	26.84
TraesCS1A01G052000.1	Wheat	nucleus, plastid	35.0	26.62
TraesCS1B01G069000.1	Wheat	nucleus, plastid	35.0	26.52
TraesCS1D01G054000.1	Wheat	nucleus	35.0	26.22
HORVU1Hr1G010580.2	Barley	nucleus, plastid	35.5	25.27
Os05t0118700-00	Rice	nucleus	35.5	24.83
PGSC0003DMT400077947	Potato	nucleus	26.0	22.03
PGSC0003DMT400020662	Potato	nucleus	25.0	20.75
PGSC0003DMT400009157	Potato	nucleus	27.5	19.16
PGSC0003DMT400014464	Potato	nucleus	27.5	14.07
PGSC0003DMT400069529	Potato	nucleus	15.0	12.24
PGSC0003DMT400027850	Potato	nucleus	20.0	12.01
PGSC0003DMT400003980	Potato	nucleus	16.5	12.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:M1CDM2	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400025358	PGSC:PGSC0003DMG400025358	EnsemblPlants:PGSC0003DMT400065247
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF115	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002965873
SEG:seg	:	:	:	:	:

Description

WOX3 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025358]

Coordinates

chr11:+:44889727..44891872

Molecular Weight (calculated)

23107.8 Da

IEP (calculated)

9.658

GRAVY (calculated)

-0.765

Length

200 amino acids

Sequence
(BLAST)

001: MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITTHLS LYGKIQCKNV FYWFQNHKAR DRQKLRKELM MLHKIHKTTS DDDVPHQFHT TPNTNNTNIN
101: LDYNSPPSTF HTLYPHSPSI LVHQGEGKDT SSSTTQMMNN MGNVDFPKHC VIENGMMRTN VQGWILMMTD MDPNSIPSCS NNKPLETLEL FPIKATGIKE

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.