Factsheet for HORVU1Hr1G010580.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G052000.1	Wheat	nucleus, plastid	83.27	88.97
TraesCS1B01G069000.1	Wheat	nucleus, plastid	82.92	88.26
TraesCS1D01G054000.1	Wheat	nucleus	82.56	86.89
Zm00001d035535_P001	Maize	nucleus	52.31	56.98
VIT_06s0004g03780.t01	Wine grape	nucleus	26.33	56.06
OQU77281	Sorghum	mitochondrion, nucleus	53.74	55.51
Zm00001d010998_P001	Maize	nucleus	42.7	54.55
Os05t0118700-00	Rice	nucleus	52.31	51.4
PGSC0003DMT400016896	Potato	mitochondrion	18.86	48.18
HORVU5Hr1G049190.2	Barley	nucleus	29.54	44.62
GSMUA_Achr5P29220_001	Banana	nucleus	29.18	41.0
KRG99904	Soybean	nucleus	27.4	36.67
KRH49082	Soybean	nucleus	26.69	35.71
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	24.91	35.53
PGSC0003DMT400065247	Potato	mitochondrion	25.27	35.5
CDY31716	Canola	nucleus	28.83	34.62
Bra035688.1-P	Field mustard	nucleus	28.83	34.62
Solyc11g072790.1.1	Tomato	nucleus	25.62	34.45
CDX77191	Canola	nucleus	28.83	34.32
CDX95764	Canola	nucleus	26.33	33.33
Bra000484.1-P	Field mustard	nucleus	26.33	32.74
CDX83299	Canola	nucleus	26.33	32.74
AT2G28610.1	Thale cress	nucleus	28.11	32.38
HORVU3Hr1G085050.3	Barley	nucleus	18.51	24.76
HORVU1Hr1G087950.1	Barley	nucleus	10.32	22.48
HORVU3Hr1G080690.1	Barley	nucleus	9.96	21.54
HORVU3Hr1G086450.1	Barley	nucleus, plastid	20.28	20.8
HORVU5Hr1G022120.1	Barley	nucleus	19.22	19.57
HORVU3Hr1G086430.1	Barley	nucleus	17.79	17.67
HORVU3Hr1G013330.1	Barley	nucleus	12.1	17.53
HORVU3Hr1G080660.5	Barley	nucleus	13.52	14.18
HORVU3Hr1G013290.3	Barley	nucleus	13.17	14.18
HORVU1Hr1G087940.1	Barley	cytosol, plasma membrane, plastid	9.96	11.24
HORVU4Hr1G051530.5	Barley	nucleus	11.74	9.57
HORVU3Hr1G060950.1	Barley	nucleus, plastid	14.95	8.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	UniProt:A0A287ELS5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU1Hr1G010580
EnsemblPlants:HORVU1Hr1G010580.2	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF00046	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF115	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000B48381F	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:24444010..24445337

Molecular Weight (calculated)

30444.9 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.409

Length

281 amino acids

Sequence
(BLAST)

001: MTATATATAA AAAAAATSVV TGTTRWCPTP EQLMILEEMY RGGLRTPTAS QIQQITAHLA HYGRIEGKNV FYWFQNHKAR DRQKLRRRLC MSHHLLSCAH
101: YYAAAKAGQY HHQQQQLLGG AAVPPPVLQH QHQQPQPQQQ YYSSPCPGGG HDHHLLPTTV PAAAAYAAAA AAGYGYPLAA VPASRCADPS LSPPNTPLSF
201: HHQGGGVVVG SPEYSLGRLG SFQVVEDTCR PSRYEQQQPQ HLAAATEDQA ASVTATGLFW RPVRLQTLDL FPGAIKEEQQ Q

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.