Factsheet for Solyc11g072790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03780.t01	Wine grape	nucleus	29.19	46.21
KRG99904	Soybean	nucleus	34.93	34.76
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	32.54	34.52
GSMUA_Achr5P29220_001	Banana	nucleus	33.01	34.5
KRH49082	Soybean	nucleus	34.45	34.29
Zm00001d010998_P001	Maize	nucleus	35.41	33.64
Bra035688.1-P	Field mustard	nucleus	36.84	32.91
CDY31716	Canola	nucleus	36.84	32.91
Bra000484.1-P	Field mustard	nucleus	34.93	32.3
CDX83299	Canola	nucleus	34.93	32.3
CDX77191	Canola	nucleus	36.36	32.2
CDX95764	Canola	nucleus	33.97	31.98
AT2G28610.1	Thale cress	nucleus	36.84	31.56
TraesCS1B01G069000.1	Wheat	nucleus, plastid	35.89	28.41
Zm00001d035535_P001	Maize	nucleus	34.93	28.29
TraesCS1A01G052000.1	Wheat	nucleus, plastid	35.41	28.14
Solyc03g096300.2.1	Tomato	nucleus	21.05	27.85
TraesCS1D01G054000.1	Wheat	nucleus	35.41	27.72
OQU77281	Sorghum	mitochondrion, nucleus	35.41	27.21
Os05t0118700-00	Rice	nucleus	36.84	26.92
HORVU1Hr1G010580.2	Barley	nucleus, plastid	34.45	25.62
Solyc06g076000.1.1	Tomato	nucleus	29.19	25.42
Solyc04g078650.2.1	Tomato	nucleus, plastid	25.84	22.31
Solyc02g083950.2.1	Tomato	nucleus	25.36	19.49
Solyc03g118770.2.1	Tomato	nucleus	27.27	14.5
Solyc06g072890.1.1	Tomato	nucleus	15.31	12.12
Solyc02g082670.2.1	Tomato	nucleus	14.83	11.31
Solyc02g077390.1.1	Tomato	nucleus	18.18	10.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K4DAY6	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF115
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc11g072790.1	EnsemblPlants:Solyc11g072790.1.1	UniParc:UPI0002769E47	SEG:seg

Description

No Description!

Coordinates

chr11:+:55991283..55992474

Molecular Weight (calculated)

24033.8 Da

IEP (calculated)

8.698

GRAVY (calculated)

-0.621

Length

209 amino acids

Sequence
(BLAST)

001: MGRPTRWSPT PEQLMFLEEM YRKGLRNPNA TQIQSITCHL SSFGKIEGKN VFYWFQNHKA RDRQKLKKKL LAQMNQQQIL AQYPIDAHST TTTTTNSNNN
101: TLFHCPTTDQ YQICPLTSTT ALLQEGEIKE ASSQVMTYLY PMDLSKPADQ NMENCMIRPY GKDWIVMMNI NPNNLPYCVN RPLKTLPLFP ITTTDDLKDQ
201: TTSSTSLSL

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.