Factsheet for VIT_06s0004g03780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016896	Potato	mitochondrion	39.39	47.27
KRG99904	Soybean	nucleus	58.33	36.67
KRH49082	Soybean	nucleus	56.82	35.71
GSMUA_Achr5P29220_001	Banana	nucleus	53.03	35.0
Zm00001d010998_P001	Maize	nucleus	58.33	35.0
Bra035688.1-P	Field mustard	nucleus	58.33	32.91
CDY31716	Canola	nucleus	58.33	32.91
Bra000484.1-P	Field mustard	nucleus	56.06	32.74
CDX83299	Canola	nucleus	56.06	32.74
CDX95764	Canola	nucleus	54.55	32.43
CDX77191	Canola	nucleus	56.82	31.78
AT2G28610.1	Thale cress	nucleus	58.33	31.56
VIT_13s0019g03460.t01	Wine grape	nucleus	33.33	31.21
Zm00001d035535_P001	Maize	nucleus	60.61	31.01
OQU77281	Sorghum	mitochondrion, nucleus	62.88	30.51
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	43.94	29.44
TraesCS1A01G052000.1	Wheat	nucleus, plastid	58.33	29.28
Solyc11g072790.1.1	Tomato	nucleus	46.21	29.19
TraesCS1B01G069000.1	Wheat	nucleus, plastid	58.33	29.17
PGSC0003DMT400065247	Potato	mitochondrion	43.94	29.0
TraesCS1D01G054000.1	Wheat	nucleus	58.33	28.84
Os05t0118700-00	Rice	nucleus	60.61	27.97
HORVU1Hr1G010580.2	Barley	nucleus, plastid	56.06	26.33
VIT_18s0001g10160.t01	Wine grape	nucleus	37.88	23.7
VIT_01s0011g05020.t01	Wine grape	nucleus	43.94	17.9
VIT_04s0023g03310.t01	Wine grape	nucleus	37.88	17.86
VIT_17s0000g02460.t01	Wine grape	nucleus	44.7	17.15
VIT_04s0044g00150.t01	Wine grape	nucleus	25.0	13.81
VIT_04s0044g00160.t01	Wine grape	nucleus	24.24	13.56
VIT_08s0056g01200.t01	Wine grape	nucleus	21.97	12.29
VIT_18s0122g01140.t01	Wine grape	nucleus	24.24	11.47
VIT_10s0003g00560.t01	Wine grape	nucleus	25.0	8.01

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260450	wikigene:100260450	MapMan:15.5.3.6	EMBL:AM429035	ProteinID:CAN60351
ProteinID:CAN60351.1	ProteinID:CBI16222	ProteinID:CBI16222.3	UniProt:D7SKP4	EMBL:FN594951	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008283	GO:GO:0009791
GO:GO:0009908	GO:GO:0009943	GO:GO:0009947	GO:GO:0010865	GO:GO:0099402	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100260450	wikigene:LOC100260450	PFAM:PF00046	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF115	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00015C7A54	ArrayExpress:VIT_06s0004g03780
EnsemblPlantsGene:VIT_06s0004g03780	EnsemblPlants:VIT_06s0004g03780.t01	RefSeq:XP_002281707	RefSeq:XP_002281707.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:4759942..4760340

Molecular Weight (calculated)

15748.9 Da

IEP (calculated)

10.443

GRAVY (calculated)

-0.760

Length

132 amino acids

Sequence
(BLAST)

001: MSPAASSRWC PTPEQLMILE EMYRGGVRTP NASQIQQITA HLSFYGKIEG KNVFYWFQNH KARDRQKLRR KLSKQLQQQQ QFHQHHHQPL QQQNQRNQPL
101: LHYLDPPVYS AFHQLFNYNT SPFLPQVILI LI

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.