Factsheet for VIT_18s0001g10160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61328	Soybean	nucleus	76.3	71.88
KRH15387	Soybean	nucleus	78.2	71.43
KRH52024	Soybean	nucleus	77.25	70.87
Solyc04g078650.2.1	Tomato	nucleus, plastid	78.67	68.59
PGSC0003DMT400020662	Potato	nucleus	78.2	68.46
KRH05655	Soybean	nucleus	77.25	66.8
AT1G46480.1	Thale cress	nucleus	66.35	55.78
CDY02582	Canola	nucleus	31.75	55.37
CDY40847	Canola	nucleus	63.98	52.94
CDY17046	Canola	nucleus	63.98	52.73
Bra032212.1-P	Field mustard	nucleus	62.56	52.59
CDY43848	Canola	nucleus	62.56	52.59
CDY25659	Canola	nucleus	62.09	52.19
Bra014055.1-P	Field mustard	nucleus	63.51	52.14
VIT_06s0004g03780.t01	Wine grape	nucleus	23.7	37.88
VIT_13s0019g03460.t01	Wine grape	nucleus	22.27	33.33
VIT_04s0023g03310.t01	Wine grape	nucleus	27.96	21.07
VIT_01s0011g05020.t01	Wine grape	nucleus	31.28	20.37
VIT_17s0000g02460.t01	Wine grape	nucleus	31.75	19.48
VIT_08s0056g01200.t01	Wine grape	nucleus	15.64	13.98
VIT_18s0122g01140.t01	Wine grape	nucleus	18.48	13.98
VIT_04s0044g00160.t01	Wine grape	nucleus	14.69	13.14
VIT_04s0044g00150.t01	Wine grape	nucleus	14.69	12.97
VIT_10s0003g00560.t01	Wine grape	nucleus	22.27	11.41

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250666	wikigene:100250666	MapMan:15.5.3.6	UniProt:A5B5M9	EMBL:AM447494
ProteinID:CAN76463	ProteinID:CAN76463.1	ProteinID:CBI19488	ProteinID:CBI19488.3	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100250666	wikigene:LOC100250666
PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF263	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC51881	UniParc:UPI0001520471	ArrayExpress:VIT_18s0001g10160	EnsemblPlantsGene:VIT_18s0001g10160	EnsemblPlants:VIT_18s0001g10160.t01	unigene:Vvi.14957
RefSeq:XP_002284927	RefSeq:XP_002284927.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:8514173..8515534

Molecular Weight (calculated)

24274.8 Da

IEP (calculated)

9.800

GRAVY (calculated)

-0.998

Length

211 amino acids

Sequence
(BLAST)

001: MGSMKVHQFA RGFWEHEPSL TLGCKRLRPL APKLANSDSV AAFDLKSFIR PESGPRKLGC SDDKRDSPQV ETHPGGTRWN PTQEQIGILE MLYKSGMRTP
101: NAQQIEQITA QLGKYGKIEG KNVFYWFQNH KARERQKQKR NSLGLGHCPR TPTSITTITL DTRVEVGREE DSPNKRKCKS WTFETVEENN RYYREEGDKT
201: LELFPLHPEG R

Best Arabidopsis Sequence Match ( AT1G46480.1 )
(BLAST)

001: MKVHEFSNGF SSSWDQHDST SSLSLSCKRL RPLAPKLSGS PPSPPSSSSG VTSATFDLKN FIRPDQTGPT KFEHKRDPPH QLETHPGGTR WNPTQEQIGI
101: LEMLYKGGMR TPNAQQIEHI TLQLGKYGKI EGKNVFYWFQ NHKARERQKQ KRNNLISLSC QSSFTTTGVF NPSVTMKTRT SSSLDIMREP MVEKEELVEE
201: NEYKRTCRSW GFENLEIENR RNKNSSTMAT TFNKIIDNVT LELFPLHPEG R

Arabidopsis Description

WOX4WUSCHEL-related homeobox 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.