Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0044g00160.t01 | Wine grape | nucleus | 92.47 | 93.64 |
| CDY41648 | Canola | nucleus | 44.35 | 61.99 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 42.68 | 61.82 |
| VIT_18s0122g01140.t01 | Wine grape | nucleus | 68.62 | 58.78 |
| Solyc02g082670.2.1 | Tomato | nucleus | 66.53 | 58.03 |
| PGSC0003DMT400003980 | Potato | nucleus | 65.69 | 57.09 |
| TraesCSU01G204800.1 | Wheat | nucleus | 37.24 | 57.05 |
| KRH36192 | Soybean | nucleus | 64.44 | 54.8 |
| Bra010531.1-P | Field mustard | nucleus | 53.56 | 54.24 |
| CDX75511 | Canola | nucleus | 57.74 | 53.91 |
| Os01t0818400-01 | Rice | nucleus | 59.83 | 53.56 |
| Bra011623.1-P | Field mustard | nucleus | 57.74 | 53.49 |
| TraesCS3B01G373800.1 | Wheat | nucleus | 58.16 | 53.26 |
| AT4G35550.1 | Thale cress | nucleus | 59.41 | 52.99 |
| CDX69148 | Canola | nucleus | 58.58 | 52.83 |
| KRG90565 | Soybean | nucleus | 62.76 | 52.82 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 52.3 | 52.74 |
| CDY24814 | Canola | nucleus | 52.3 | 52.3 |
| TraesCS3A01G341700.1 | Wheat | nucleus | 57.74 | 52.08 |
| CDX72546 | Canola | nucleus | 56.49 | 51.72 |
| TraesCS3D01G335500.1 | Wheat | nucleus | 56.07 | 50.95 |
| Zm00001d043076_P001 | Maize | nucleus | 57.32 | 50.18 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 48.54 | 49.57 |
| CDY40623 | Canola | nucleus | 54.39 | 49.43 |
| EES01660 | Sorghum | nucleus | 57.32 | 49.28 |
| Bra017720.1-P | Field mustard | nucleus | 54.39 | 49.06 |
| Zm00001d012516_P001 | Maize | nucleus | 56.9 | 48.23 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 43.1 | 46.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.05 | 42.96 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 48.12 | 40.64 |
| VIT_06s0004g03780.t01 | Wine grape | nucleus | 13.81 | 25.0 |
| VIT_13s0019g03460.t01 | Wine grape | nucleus | 12.55 | 21.28 |
| VIT_08s0056g01200.t01 | Wine grape | nucleus | 18.83 | 19.07 |
| VIT_18s0001g10160.t01 | Wine grape | nucleus | 12.97 | 14.69 |
| VIT_04s0023g03310.t01 | Wine grape | nucleus | 16.32 | 13.93 |
| VIT_01s0011g05020.t01 | Wine grape | nucleus | 17.99 | 13.27 |
| VIT_17s0000g02460.t01 | Wine grape | nucleus | 17.15 | 11.92 |
| VIT_10s0003g00560.t01 | Wine grape | nucleus | 20.5 | 11.89 |
| HORVU1Hr1G087940.1 | Barley | cytosol, plasma membrane, plastid | 12.13 | 11.65 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100267830 | wikigene:100267830 | MapMan:15.5.3.6 | ProteinID:CBI37641 | ProteinID:CBI37641.3 |
| UniProt:D7U465 | EMBL:FN596506 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | EntrezGene:LOC100267830 | wikigene:LOC100267830 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF340 | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:TC55315 | TIGR:TC65717 | UniParc:UPI0001BE4EC2 |
| ArrayExpress:VIT_04s0044g00150 | EnsemblPlantsGene:VIT_04s0044g00150 | EnsemblPlants:VIT_04s0044g00150.t01 | unigene:Vvi.333 | RefSeq:XP_002279942 | RefSeq:XP_002279942.1 |
Description
No Description!
Coordinates
chr4:+:20843774..20847365
Molecular Weight (calculated)
27056.8 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.815
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVMTDAQME ILRKQISVYA TICEQLVEMH KSLTSHQDLA GVRLGNLYCD PLMTSTGHKI TARQRWTPTP VQLQILERIF DQGYGTPSKQ KIKEITSDLS
101: QHGQISETNV YNWFQNRRAR SKRKQLVTAP NNADSEVETE VESPKDKKTK SENFLPQQNS ASRPEDLCFQ NPELGSRLDF LDQQTHKEEA IFPSDGGIKP
201: SGNLSPVAFY AGNDHQIGKM EVPGSYNPYQ QTEDYSMSG
101: QHGQISETNV YNWFQNRRAR SKRKQLVTAP NNADSEVETE VESPKDKKTK SENFLPQQNS ASRPEDLCFQ NPELGSRLDF LDQQTHKEEA IFPSDGGIKP
201: SGNLSPVAFY AGNDHQIGKM EVPGSYNPYQ QTEDYSMSG
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Arabidopsis Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.