Factsheet for TraesCSU01G204800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G373800.1	Wheat	nucleus	88.46	52.87
TraesCS3D01G335500.1	Wheat	nucleus	89.1	52.85
TraesCS3A01G341700.1	Wheat	nucleus	89.74	52.83
HORVU3Hr1G080660.5	Barley	nucleus	90.38	52.61
Os01t0818400-01	Rice	nucleus	78.21	45.69
Zm00001d043076_P001	Maize	nucleus	69.23	39.56
EES01660	Sorghum	nucleus	69.87	39.21
GSMUA_Achr4P25530_001	Banana	nucleus	51.92	38.39
KRH60910	Soybean	nucleus	50.64	37.98
VIT_04s0044g00150.t01	Wine grape	nucleus	57.05	37.24
Zm00001d012516_P001	Maize	nucleus	67.31	37.23
VIT_04s0044g00160.t01	Wine grape	nucleus	55.77	36.86
KRH51590	Soybean	nucleus	50.64	36.07
CDY01358	Canola	nucleus	28.21	33.08
Bra012245.1-P	Field mustard	nucleus	28.21	33.08
VIT_18s0122g01140.t01	Wine grape	nucleus	58.33	32.62
Solyc02g082670.2.1	Tomato	nucleus	55.13	31.39
PGSC0003DMT400003980	Potato	nucleus	55.13	31.27
KRH01611	Soybean	nucleus	51.92	30.45
KRH70496	Soybean	nucleus	50.0	29.77
KRH36192	Soybean	nucleus	52.56	29.18
CDY29511	Canola	nucleus	36.54	28.08
Bra025839.1-P	Field mustard	nucleus	36.54	28.08
KRG90565	Soybean	nucleus	50.64	27.82
AT1G20710.1	Thale cress	nucleus	33.97	26.9
CDY65899	Canola	nucleus	35.9	26.79
CDY31870	Canola	nucleus	33.33	26.67
CDX93197	Canola	nucleus	33.33	26.67
AT1G20700.1	Thale cress	nucleus	35.26	26.07

Protein Annotations

EnsemblPlants:TraesCSU01G204800.1	EnsemblPlantsGene:TraesCSU01G204800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF340
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:304503269..304503739

Molecular Weight (calculated)

17774.6 Da

IEP (calculated)

7.676

GRAVY (calculated)

-1.108

Length

156 amino acids

Sequence
(BLAST)

001: MSLGNLYCNP LMVHGGHKIT ARQRWTPTQM QLQILESIFD QCNGTPSKQK IKDITAELSQ HGQILETNVY NWFQNRRARS KRKQAASSLP NNAESEAEGD
101: EESLTDKNPR SDGSQQENMA VRAHNPERIS EMHRHFDAAE REQVRGPWSS NDASRS

Best Arabidopsis Sequence Match ( AT4G35550.1 )
(BLAST)

001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG

Arabidopsis Description

WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.