Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g082670.2.1 | Tomato | nucleus | 97.45 | 97.81 |
| VIT_04s0044g00150.t01 | Wine grape | nucleus | 57.09 | 65.69 |
| VIT_04s0044g00160.t01 | Wine grape | nucleus | 56.0 | 65.25 |
| CDY41648 | Canola | nucleus | 40.0 | 64.33 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 37.09 | 61.82 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 49.82 | 57.81 |
| KRH36192 | Soybean | nucleus | 57.82 | 56.58 |
| Os01t0818400-01 | Rice | nucleus | 54.55 | 56.18 |
| KRG90565 | Soybean | nucleus | 57.82 | 55.99 |
| CDX75511 | Canola | nucleus | 52.0 | 55.86 |
| CDX69148 | Canola | nucleus | 53.45 | 55.47 |
| Bra011623.1-P | Field mustard | nucleus | 52.0 | 55.43 |
| TraesCSU01G204800.1 | Wheat | nucleus | 31.27 | 55.13 |
| CDX72546 | Canola | nucleus | 52.0 | 54.79 |
| Bra010531.1-P | Field mustard | nucleus | 46.91 | 54.66 |
| AT4G35550.1 | Thale cress | nucleus | 53.09 | 54.48 |
| CDY40623 | Canola | nucleus | 52.0 | 54.37 |
| TraesCS3B01G373800.1 | Wheat | nucleus | 51.27 | 54.02 |
| Bra017720.1-P | Field mustard | nucleus | 51.64 | 53.58 |
| CDY24814 | Canola | nucleus | 46.55 | 53.56 |
| TraesCS3A01G341700.1 | Wheat | nucleus | 51.27 | 53.21 |
| Zm00001d043076_P001 | Maize | nucleus | 51.64 | 52.01 |
| TraesCS3D01G335500.1 | Wheat | nucleus | 49.45 | 51.71 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 44.0 | 51.71 |
| EES01660 | Sorghum | nucleus | 52.0 | 51.44 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 40.0 | 50.0 |
| Zm00001d012516_P001 | Maize | nucleus | 49.82 | 48.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.82 | 48.24 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 48.0 | 46.64 |
| PGSC0003DMT400016896 | Potato | mitochondrion | 11.27 | 28.18 |
| PGSC0003DMT400053435 | Potato | nucleus | 11.27 | 19.75 |
| PGSC0003DMT400069529 | Potato | nucleus | 14.91 | 16.73 |
| PGSC0003DMT400065247 | Potato | mitochondrion | 12.0 | 16.5 |
| PGSC0003DMT400020662 | Potato | nucleus | 14.18 | 16.18 |
| PGSC0003DMT400027850 | Potato | nucleus | 17.09 | 14.11 |
| HORVU1Hr1G087940.1 | Barley | cytosol, plasma membrane, plastid | 12.73 | 14.06 |
| PGSC0003DMT400077947 | Potato | nucleus | 12.0 | 13.98 |
| PGSC0003DMT400009157 | Potato | nucleus | 12.73 | 12.2 |
| PGSC0003DMT400014464 | Potato | nucleus | 15.64 | 11.0 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102596944 | MapMan:15.5.3.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M0ZMN1 | PFAM:PF00046 | EnsemblPlantsGene:PGSC0003DMG400001565 | PGSC:PGSC0003DMG400001565 |
| EnsemblPlants:PGSC0003DMT400003980 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF340 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00029537AF | RefSeq:XP_006340846.1 | SEG:seg | : | : | : |
Description
HB2 homeodomain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001565]
Coordinates
chr2:-:38464953..38468009
Molecular Weight (calculated)
30860.3 Da
IEP (calculated)
5.610
GRAVY (calculated)
-0.842
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWEKQQQQQ PPVSAPQQTV EELNGAVSGG MFVKVMTDEQ MEVLRKQIAV YATICEQLVD LHKSMASQHD LAGARLGNLY CDPLVTSAGH KITGRQRWTP
101: TPMQLQILER IFEQGNGTPT KQKIKDITSE LSQHGQISET NVYNWFQNRR ARSKRKQQVA ATNTTESEVE TEVESPNEKK TKPEDLQSSH MPTSMAEDLG
201: YENPDVSSGM HSLDPRTSKP EPMFPSDGSS KPAASYGQMS FYGMSNPRMD QLMGKMEVPG SYHPYLHADD YNMTG
101: TPMQLQILER IFEQGNGTPT KQKIKDITSE LSQHGQISET NVYNWFQNRR ARSKRKQQVA ATNTTESEVE TEVESPNEKK TKPEDLQSSH MPTSMAEDLG
201: YENPDVSSGM HSLDPRTSKP EPMFPSDGSS KPAASYGQMS FYGMSNPRMD QLMGKMEVPG SYHPYLHADD YNMTG
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Arabidopsis Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.