Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75511 | Canola | nucleus | 99.22 | 100.0 |
| CDX69148 | Canola | nucleus | 95.35 | 92.83 |
| Bra017720.1-P | Field mustard | nucleus | 86.82 | 84.53 |
| Bra010531.1-P | Field mustard | nucleus | 75.19 | 82.2 |
| AT4G35550.1 | Thale cress | nucleus | 85.27 | 82.09 |
| VIT_04s0044g00150.t01 | Wine grape | nucleus | 53.49 | 57.74 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 36.43 | 56.97 |
| VIT_04s0044g00160.t01 | Wine grape | nucleus | 51.55 | 56.36 |
| PGSC0003DMT400003980 | Potato | nucleus | 55.43 | 52.0 |
| Bra012245.1-P | Field mustard | nucleus | 26.74 | 51.88 |
| Solyc02g082670.2.1 | Tomato | nucleus | 55.04 | 51.82 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 47.29 | 51.48 |
| KRH01611 | Soybean | nucleus | 51.94 | 50.38 |
| KRH70496 | Soybean | nucleus | 50.39 | 49.62 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 43.41 | 47.86 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 37.98 | 44.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.84 | 44.37 |
| Bra025839.1-P | Field mustard | nucleus | 33.33 | 42.36 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 44.96 | 40.99 |
| Bra028749.1-P | Field mustard | nucleus | 11.63 | 17.24 |
| Bra009132.1-P | Field mustard | nucleus | 12.02 | 16.15 |
| Bra034855.1-P | Field mustard | mitochondrion | 8.53 | 15.38 |
| Bra014055.1-P | Field mustard | nucleus | 14.73 | 14.79 |
| Bra032212.1-P | Field mustard | nucleus | 14.34 | 14.74 |
| Bra036446.1-P | Field mustard | nucleus | 15.12 | 14.72 |
| Bra023638.1-P | Field mustard | nucleus | 15.12 | 14.18 |
| Bra035688.1-P | Field mustard | nucleus | 12.79 | 14.1 |
| Bra002108.1-P | Field mustard | nucleus | 14.73 | 13.92 |
| Bra000484.1-P | Field mustard | nucleus | 12.02 | 13.72 |
| Bra022008.1-P | Field mustard | nucleus | 16.28 | 13.64 |
| Bra017448.1-P | Field mustard | nucleus | 14.34 | 13.41 |
| Bra039894.1-P | Field mustard | nucleus | 14.34 | 12.25 |
| Bra024485.1-P | Field mustard | nucleus | 13.95 | 12.24 |
| Bra026791.1-P | Field mustard | nucleus | 12.02 | 11.97 |
| Bra037245.1-P | Field mustard | nucleus | 13.95 | 11.58 |
| Bra005464.1-P | Field mustard | nucleus | 17.44 | 11.54 |
| Bra031980.1-P | Field mustard | nucleus | 14.34 | 11.49 |
| Bra002576.1-P | Field mustard | nucleus | 9.3 | 11.43 |
| Bra022960.1-P | Field mustard | nucleus | 17.05 | 11.2 |
| HORVU1Hr1G087940.1 | Barley | cytosol, plasma membrane, plastid | 10.47 | 10.84 |
| Bra022267.1-P | Field mustard | nucleus | 14.73 | 10.83 |
| Bra001694.1-P | Field mustard | nucleus | 14.73 | 10.76 |
| Bra020321.1-P | Field mustard | nucleus | 8.14 | 10.55 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | EnsemblPlantsGene:Bra011623 | EnsemblPlants:Bra011623.1 | EnsemblPlants:Bra011623.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M4D566 | PFAM:PF00046 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002546F6A |
| SEG:seg | : | : | : | : | : |
Description
AT4G35550 (E=9e-088) HB-4, WOX13, ATWOX13 | WOX13 (WUSCHEL-RELATED HOMEOBOX 13); DNA binding / transcription factor
Coordinates
chrA01:+:1369091..1370429
Molecular Weight (calculated)
28574.2 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.907
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEWDNNHQQ QPNNHNSSNL QGIDVSGGGS SSGGMYVKVM TDEQLETLRK QIAIYATICE RLVEMHKTLT SQQDLAGGRL GGLYVDPTIG HKMTARQRWT
101: PTPVQLQILE RIFDQGTGTP SKQKIKDITE ELSQHGQISE QNVYNWFQNR RARSKRKQHG GGGGGGVGSS NNNNGESEVE TETETLNGKR KMPESLRVLP
201: DGNNGIGTTS TTSPRPEDLC FQSPEMSSDL HLLGVLSNPR DDHSYNLYDH VEEYGMSG
101: PTPVQLQILE RIFDQGTGTP SKQKIKDITE ELSQHGQISE QNVYNWFQNR RARSKRKQHG GGGGGGVGSS NNNNGESEVE TETETLNGKR KMPESLRVLP
201: DGNNGIGTTS TTSPRPEDLC FQSPEMSSDL HLLGVLSNPR DDHSYNLYDH VEEYGMSG
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Arabidopsis Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.