Factsheet for Bra017720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40623	Canola	nucleus	96.98	97.72
Bra011623.1-P	Field mustard	nucleus	84.53	86.82
AT4G35550.1	Thale cress	nucleus	82.26	81.34
Bra010531.1-P	Field mustard	nucleus	71.32	80.08
GSMUA_Achr4P29470_001	Banana	nucleus	34.34	55.15
VIT_04s0044g00150.t01	Wine grape	nucleus	49.06	54.39
VIT_04s0044g00160.t01	Wine grape	nucleus	47.92	53.81
PGSC0003DMT400003980	Potato	nucleus	53.58	51.64
Solyc02g082670.2.1	Tomato	nucleus	53.21	51.46
Bra012245.1-P	Field mustard	nucleus	24.91	49.62
GSMUA_Achr1P17980_001	Banana	nucleus	43.77	48.95
KRH01611	Soybean	nucleus	48.3	48.12
KRH70496	Soybean	nucleus	47.55	48.09
GSMUA_Achr7P04050_001	Banana	nucleus	40.0	45.3
GSMUA_AchrUn_...	Banana	nucleus	46.42	43.31
GSMUA_Achr5P11080_001	Banana	nucleus	35.09	42.27
Bra025839.1-P	Field mustard	nucleus	32.08	41.87
GSMUA_Achr3P14840_001	Banana	nucleus	43.02	40.28
Bra028749.1-P	Field mustard	nucleus	11.7	17.82
Bra009132.1-P	Field mustard	nucleus	12.08	16.67
Bra034855.1-P	Field mustard	mitochondrion	8.3	15.38
Bra014055.1-P	Field mustard	nucleus	14.72	15.18
Bra032212.1-P	Field mustard	nucleus	14.34	15.14
Bra036446.1-P	Field mustard	nucleus	14.72	14.72
Bra002108.1-P	Field mustard	nucleus	14.72	14.29
Bra023638.1-P	Field mustard	nucleus	14.72	14.18
Bra022008.1-P	Field mustard	nucleus	16.23	13.96
Bra000484.1-P	Field mustard	nucleus	11.7	13.72
Bra035688.1-P	Field mustard	nucleus	12.08	13.68
Bra017448.1-P	Field mustard	nucleus	13.21	12.68
Bra024485.1-P	Field mustard	nucleus	13.58	12.24
Bra002576.1-P	Field mustard	nucleus	9.43	11.9
Bra031980.1-P	Field mustard	nucleus	14.34	11.8
Bra005464.1-P	Field mustard	nucleus	16.98	11.54
Bra039894.1-P	Field mustard	nucleus	12.83	11.26
Bra037245.1-P	Field mustard	nucleus	13.21	11.25
Bra026791.1-P	Field mustard	nucleus	10.94	11.2
Bra022960.1-P	Field mustard	nucleus	16.6	11.2
HORVU1Hr1G087940.1	Barley	cytosol, plasma membrane, plastid	10.19	10.84
Bra020321.1-P	Field mustard	nucleus	7.92	10.55
Bra022267.1-P	Field mustard	nucleus	13.21	9.97
Bra001694.1-P	Field mustard	nucleus	13.21	9.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra017720	EnsemblPlants:Bra017720.1	EnsemblPlants:Bra017720.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4DMI5	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002540B5F
SEG:seg	:	:	:	:	:

Description

AT4G35550 (E=4e-092) HB-4, WOX13, ATWOX13 | WOX13 (WUSCHEL-RELATED HOMEOBOX 13); DNA binding / transcription factor

Coordinates

chrA03:-:29981149..29982217

Molecular Weight (calculated)

29170.0 Da

IEP (calculated)

5.175

GRAVY (calculated)

-0.835

Length

265 amino acids

Sequence
(BLAST)

001: MEWDNQQQAS NNPSSNLQGI DANGGSGSGG MYVKGMTDEQ LETLRKQIAI YATICERLVE MHKTLTSQQD LAGRVGGLYA DPTFGHKMTG GRQRWTPTPV
101: QLQILERIFD QGIGTPSKQK IKDITEELSQ HGPIAEQNVY NWFQNRRARS KRKQHGGGGG GGVGSSNNNN GETEVETDQT ETVNEKRKMP ESLLVLPDGN
201: NNNGIGTTSA TSPRAEEDLC FHCPEMSSDL HLLGVLSNPR DEHLVGKMGM SESYNLYDHV EDYGM

Best Arabidopsis Sequence Match ( AT4G35550.1 )
(BLAST)

001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG

Arabidopsis Description

WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.