Factsheet for Bra039894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38144	Canola	nucleus	99.01	99.01
CDY55370	Canola	nucleus	97.68	97.68
CDY47803	Canola	nucleus	96.36	96.36
Bra037245.1-P	Field mustard	nucleus	83.77	81.35
Bra024485.1-P	Field mustard	nucleus	77.81	79.93
AT2G17950.1	Thale cress	nucleus	74.5	77.05
GSMUA_Achr7P07430_001	Banana	nucleus	22.85	48.25
VIT_04s0023g03310.t01	Wine grape	nucleus	40.73	43.93
KRH28790	Soybean	nucleus	39.4	41.18
KRH76665	Soybean	nucleus	39.07	39.86
Solyc02g083950.2.1	Tomato	nucleus	35.1	38.97
PGSC0003DMT400009157	Potato	nucleus	35.43	37.28
Bra028749.1-P	Field mustard	nucleus	18.21	31.61
Bra009132.1-P	Field mustard	nucleus	18.87	29.69
Bra034855.1-P	Field mustard	mitochondrion	12.58	26.57
Bra000484.1-P	Field mustard	nucleus	17.22	23.01
Bra035688.1-P	Field mustard	nucleus	17.55	22.65
Bra026791.1-P	Field mustard	nucleus	17.88	20.85
Bra032212.1-P	Field mustard	nucleus	17.22	20.72
Bra014055.1-P	Field mustard	nucleus	17.55	20.62
Bra017448.1-P	Field mustard	nucleus	17.22	18.84
Bra012245.1-P	Field mustard	nucleus	8.28	18.8
Bra002576.1-P	Field mustard	nucleus	12.25	17.62
Bra022267.1-P	Field mustard	nucleus	20.2	17.38
Bra001694.1-P	Field mustard	nucleus	19.87	17.0
Bra036446.1-P	Field mustard	nucleus	13.91	15.85
Bra025839.1-P	Field mustard	nucleus	10.6	15.76
Bra020321.1-P	Field mustard	nucleus	10.26	15.58
Bra022008.1-P	Field mustard	nucleus	15.23	14.94
Bra011623.1-P	Field mustard	nucleus	12.25	14.34
Bra002108.1-P	Field mustard	nucleus	12.58	13.92
Bra005464.1-P	Field mustard	nucleus	17.88	13.85
Bra023638.1-P	Field mustard	nucleus	12.58	13.82
Bra022960.1-P	Field mustard	nucleus	16.89	12.98
Bra017720.1-P	Field mustard	nucleus	11.26	12.83
Bra031980.1-P	Field mustard	nucleus	13.24	12.42
Bra010531.1-P	Field mustard	nucleus	9.6	12.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra039894	EnsemblPlants:Bra039894.1	EnsemblPlants:Bra039894.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4FFM0	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF510	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000254119A
SEG:seg	:	:	:	:	:

Description

AT2G17950 (E=2e-113) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator

Coordinates

chrA07:+:1831449..1833038

Molecular Weight (calculated)

34280.6 Da

IEP (calculated)

7.382

GRAVY (calculated)

-1.035

Length

302 amino acids

Sequence
(BLAST)

001: MEPPQHHHQA DQENGNNNKS GSGSYTCRQT STRWTPTTEQ IRILKDLYYN NGVRSPTADQ IQKISARLRL YGKIEGKNVF YWFQNHKARE RQKKRFNGTV
101: MTTPTSSSPN SVMMASDHYY NHHPLLHHPQ QGVTMHRPAS VNVKLDQENH LLQENRSYPS FNNGTGTECG ALNASSNGYM NSHLYGSIEQ DCSMSYNNVG
201: GEWTNMDHNH HYSAPAYNFF DRPKPMYELE VHEEEGDYGG DAYLEHRRTL PLFPMHGEDH INGGGGVIWK HGQSDGRDRY GRGPCASLKL CLNSHAAGVT
301: QD

Best Arabidopsis Sequence Match ( AT2G17950.1 )
(BLAST)

001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN

Arabidopsis Description

WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.