Factsheet for Bra000484.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83299	Canola	nucleus	100.0	100.0
CDX95764	Canola	nucleus	92.04	93.69
Bra035688.1-P	Field mustard	nucleus	85.84	82.91
AT2G28610.1	Thale cress	nucleus	84.96	78.69
VIT_06s0004g03780.t01	Wine grape	nucleus	32.74	56.06
PGSC0003DMT400016896	Potato	mitochondrion	21.24	43.64
GSMUA_Achr5P29220_001	Banana	nucleus	34.96	39.5
KRG99904	Soybean	nucleus	35.84	38.57
KRH49082	Soybean	nucleus	35.84	38.57
Zm00001d010998_P001	Maize	nucleus	35.4	36.36
Solyc11g072790.1.1	Tomato	nucleus	32.3	34.93
PGSC0003DMT400065247	Potato	mitochondrion	29.65	33.5
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	28.76	32.99
Zm00001d035535_P001	Maize	nucleus	35.4	31.01
OQU77281	Sorghum	mitochondrion, nucleus	36.73	30.51
TraesCS1A01G052000.1	Wheat	nucleus, plastid	34.07	29.28
TraesCS1D01G054000.1	Wheat	nucleus	34.51	29.21
TraesCS1B01G069000.1	Wheat	nucleus, plastid	33.63	28.79
Os05t0118700-00	Rice	nucleus	34.51	27.27
HORVU1Hr1G010580.2	Barley	nucleus, plastid	32.74	26.33
Bra028749.1-P	Field mustard	nucleus	19.91	25.86
Bra009132.1-P	Field mustard	nucleus	19.91	23.44
Bra014055.1-P	Field mustard	nucleus	25.22	22.18
Bra032212.1-P	Field mustard	nucleus	24.34	21.91
Bra002576.1-P	Field mustard	nucleus	19.03	20.48
Bra026791.1-P	Field mustard	nucleus	23.45	20.46
Bra034855.1-P	Field mustard	mitochondrion	12.83	20.28
Bra020321.1-P	Field mustard	nucleus	17.26	19.6
Bra017448.1-P	Field mustard	nucleus	22.12	18.12
Bra012245.1-P	Field mustard	nucleus	10.62	18.05
Bra039894.1-P	Field mustard	nucleus	23.01	17.22
Bra037245.1-P	Field mustard	nucleus	23.45	17.04
Bra024485.1-P	Field mustard	nucleus	21.68	16.67
Bra022267.1-P	Field mustard	nucleus	24.78	15.95
Bra001694.1-P	Field mustard	nucleus	24.34	15.58
Bra025839.1-P	Field mustard	nucleus	13.72	15.27
Bra022008.1-P	Field mustard	nucleus	16.81	12.34
Bra011623.1-P	Field mustard	nucleus	13.72	12.02
Bra017720.1-P	Field mustard	nucleus	13.72	11.7
Bra010531.1-P	Field mustard	nucleus	11.95	11.44
Bra002108.1-P	Field mustard	nucleus	13.27	10.99
Bra036446.1-P	Field mustard	nucleus	12.83	10.94
Bra023638.1-P	Field mustard	nucleus	12.83	10.55
Bra005464.1-P	Field mustard	nucleus	15.04	8.72
Bra031980.1-P	Field mustard	nucleus	12.39	8.7
Bra022960.1-P	Field mustard	nucleus	14.16	8.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra000484	EnsemblPlants:Bra000484.1	EnsemblPlants:Bra000484.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4C8F6	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF115	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000253FFAA
SEG:seg	:	:	:	:	:

Description

AT2G28610 (E=1e-086) PRS, WOX3, PRS1 | PRS (PRESSED FLOWER); transcription factor

Coordinates

chrA03:-:11336689..11337728

Molecular Weight (calculated)

26088.5 Da

IEP (calculated)

9.590

GRAVY (calculated)

-0.604

Length

226 amino acids

Sequence
(BLAST)

001: MSPVASTRWC PTTEQLMILE EMYRTGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ LQQIKLKPIS MVSEPLNNII
101: DHHNLYYHNH HRPYDHSSFA CCSQPSSVCL SHQGIGVEAQ SKVVNEYYYN KSGPEDMLMQ KPITGQNSSY GRDWMVMMDM GPRPSYSSLS PIPCINMMMN
201: SPKIPPKTLE LFPISSINSK QDSSKL

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.