Factsheet for Bra017448.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70975	Canola	nucleus	56.16	93.37
CDY41086	Canola	nucleus	87.68	90.64
AT2G01500.1	Thale cress	nucleus	62.68	63.84
Bra026791.1-P	Field mustard	nucleus	30.07	32.05
Bra028749.1-P	Field mustard	nucleus	18.12	28.74
Bra009132.1-P	Field mustard	nucleus	18.12	26.04
Bra001694.1-P	Field mustard	nucleus	31.16	24.36
Bra022267.1-P	Field mustard	nucleus	30.43	23.93
Bra034855.1-P	Field mustard	mitochondrion	11.59	22.38
Bra000484.1-P	Field mustard	nucleus	18.12	22.12
Bra032212.1-P	Field mustard	nucleus	19.57	21.51
Bra035688.1-P	Field mustard	nucleus	18.12	21.37
Bra014055.1-P	Field mustard	nucleus	19.57	21.01
Bra002576.1-P	Field mustard	nucleus	15.22	20.0
Bra012245.1-P	Field mustard	nucleus	9.42	19.55
Bra020321.1-P	Field mustard	nucleus	13.41	18.59
Bra024485.1-P	Field mustard	nucleus	19.57	18.37
Bra039894.1-P	Field mustard	nucleus	18.84	17.22
Bra037245.1-P	Field mustard	nucleus	19.2	17.04
Bra025839.1-P	Field mustard	nucleus	11.23	15.27
Bra036446.1-P	Field mustard	nucleus	14.13	14.72
Bra011623.1-P	Field mustard	nucleus	13.41	14.34
Bra022008.1-P	Field mustard	nucleus	15.58	13.96
Bra010531.1-P	Field mustard	nucleus	11.59	13.56
Bra017720.1-P	Field mustard	nucleus	12.68	13.21
Bra023638.1-P	Field mustard	nucleus	13.04	13.09
Bra002108.1-P	Field mustard	nucleus	12.32	12.45
Bra031980.1-P	Field mustard	nucleus	14.49	12.42
Bra022960.1-P	Field mustard	nucleus	14.86	10.43
Bra005464.1-P	Field mustard	nucleus	14.49	10.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EnsemblPlantsGene:Bra017448	EnsemblPlants:Bra017448.1	EnsemblPlants:Bra017448.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4DLR7	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF509	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002542348
SEG:seg	:	:	:	:	:

Description

AT2G01500 (E=4e-069) PFS2, WOX6, HOS9 | PFS2 (PRETTY FEW SEEDS 2); transcription factor

Coordinates

chrA09:+:15474821..15476174

Molecular Weight (calculated)

31873.8 Da

IEP (calculated)

5.256

GRAVY (calculated)

-0.923

Length

276 amino acids

Sequence
(BLAST)

001: MGYISNNNLI NYLAFSTTKP HLLSQCNSID NDHHQQLING SENNSAAAAS SRWNPTPEQI TALEEIYKRG TRTPTTEQIQ QIASKLSKYG RIEGKNVFYW
101: FQNHKSRERL KRRRCEGDND INSVHEPLKD VKDSSSGGYR VDQTKIYASF PHTNQRPQNE LVLPNLINNE DHCKTEESER ASDAGKEAMC GNLVASFVNQ
201: EPGEINIEED RYNVRGEVQE EEEEDETREI QTLNLFPVLE NQEKTDWFAE KKKANVISCI FALFYPFIHE HFHHID

Best Arabidopsis Sequence Match ( AT2G01500.1 )
(BLAST)

001: MGYISNNNLI NYLPLSTTQP PLLLTHCDIN GNDHHQLITA SSGEHDIDER KNNIPAAATL RWNPTPEQIT TLEELYRSGT RTPTTEQIQQ IASKLRKYGR
101: IEGKNVFYWF QNHKARERLK RRRREGGAII KPHKDVKDSS SGGHRVDQTK LCPSFPHTNR PQPQHELDPA SYNKDNNANN EDHGTTEESD QRASEVGKYA
201: TWRNLVTWSI TQQPEEINID ENVNGEEEET RDNRTLNLFP VREYQEKTGR LIEKTKACNY CYYYEFMPLK N

Arabidopsis Description

WOX6WUSCHEL-related homeobox 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.