Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P02040_001 | Banana | nucleus | 30.77 | 34.38 |
| VIT_04s0023g03310.t01 | Wine grape | nucleus | 62.24 | 31.79 |
| KRH28790 | Soybean | nucleus | 62.24 | 30.8 |
| KRH76665 | Soybean | nucleus | 62.24 | 30.07 |
| Solyc02g083950.2.1 | Tomato | nucleus | 56.64 | 29.78 |
| PGSC0003DMT400009157 | Potato | nucleus | 58.04 | 28.92 |
| GSMUA_Achr4P30610_001 | Banana | nucleus | 34.27 | 26.63 |
| Bra024485.1-P | Field mustard | nucleus | 51.75 | 25.17 |
| CDY29212 | Canola | nucleus | 51.75 | 25.17 |
| GSMUA_Achr9P04090_001 | Banana | nucleus | 32.87 | 24.87 |
| AT2G17950.1 | Thale cress | nucleus | 49.65 | 24.32 |
| GSMUA_Achr2P16080_001 | Banana | nucleus | 32.87 | 24.23 |
| GSMUA_Achr7P18230_001 | Banana | nucleus | 32.17 | 23.83 |
| CDY38144 | Canola | nucleus | 48.95 | 23.18 |
| CDY55370 | Canola | nucleus | 48.95 | 23.18 |
| Bra037245.1-P | Field mustard | nucleus | 50.35 | 23.15 |
| Bra039894.1-P | Field mustard | nucleus | 48.25 | 22.85 |
| CDY30337 | Canola | nucleus | 50.35 | 22.78 |
| CDY47803 | Canola | nucleus | 47.55 | 22.52 |
| GSMUA_Achr5P29220_001 | Banana | nucleus | 31.47 | 22.5 |
| GSMUA_Achr7P14860_001 | Banana | nucleus | 28.67 | 21.58 |
| GSMUA_Achr10P... | Banana | nucleus | 33.57 | 20.6 |
| GSMUA_Achr8P15620_001 | Banana | nucleus, plastid | 31.47 | 19.23 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 20.28 | 17.58 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 21.68 | 14.09 |
| GSMUA_Achr10P... | Banana | nucleus | 23.78 | 13.93 |
| GSMUA_Achr4P25530_001 | Banana | nucleus | 20.28 | 13.74 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 20.98 | 12.82 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 20.98 | 12.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.38 | 11.27 |
| GSMUA_Achr5P27730_001 | Banana | nucleus | 23.08 | 10.58 |
| GSMUA_Achr10P... | Banana | nucleus | 19.58 | 10.26 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 20.28 | 10.25 |
| GSMUA_Achr10P... | Banana | nucleus | 18.88 | 10.15 |
| GSMUA_Achr3P09460_001 | Banana | nucleus | 20.98 | 9.38 |
| GSMUA_Achr9P06660_001 | Banana | nucleus | 24.48 | 9.04 |
| GSMUA_Achr6P15910_001 | Banana | nucleus | 19.58 | 8.83 |
| GSMUA_Achr9P05010_001 | Banana | nucleus, plastid | 21.68 | 8.54 |
| GSMUA_Achr8P27170_001 | Banana | nucleus | 23.08 | 7.38 |
| GSMUA_Achr8P01590_001 | Banana | nucleus | 20.98 | 7.14 |
| CDY29211 | Canola | mitochondrion | 4.2 | 4.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr7G07430_001 | EnsemblPlants:GSMUA_Achr7P07430_001 |
| EnsemblPlants:GSMUA_Achr7T07430_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M0TFI3 | PFAM:PF00046 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF123 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002967E14 |
| SEG:seg | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G07430_001]
Coordinates
chr7:+:5558049..5558480
Molecular Weight (calculated)
16285.1 Da
IEP (calculated)
10.743
GRAVY (calculated)
-0.852
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPQHYQQQQ QQQQLLQEDG NIGSCSSGGG GSKASFLCRQ SSTRWIPTSD QIRILRDLYY NNGLRSPNAE QIQRISARLR QYGKIEGKNV FYWFQNHKAR
101: ERQKKRLTVD ITATTSSSNK SSAVVSPGTV NKRTFFSFTF GLS
101: ERQKKRLTVD ITATTSSSNK SSAVVSPGTV NKRTFFSFTF GLS
001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
Arabidopsis Description
WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.