Factsheet for GSMUA_Achr2P16080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30610_001	Banana	nucleus	81.44	85.87
GSMUA_Achr8P02040_001	Banana	nucleus	39.69	60.16
GSMUA_Achr9P04090_001	Banana	nucleus	56.7	58.2
GSMUA_Achr7P18230_001	Banana	nucleus	56.7	56.99
GSMUA_Achr5P29220_001	Banana	nucleus	48.45	47.0
TraesCS5B01G156400.1	Wheat	nucleus	57.73	46.47
TraesCS5A01G157300.1	Wheat	nucleus	57.73	46.47
TraesCS5D01G162600.1	Wheat	nucleus	56.7	45.45
OQU82902	Sorghum	nucleus	59.79	44.62
Zm00001d004889_P001	Maize	nucleus	59.79	44.27
Os12t0101600-01	Rice	nucleus	53.09	44.02
Os11t0102100-01	Rice	nucleus	53.09	44.02
Zm00001d052598_P001	Maize	nucleus	59.28	43.4
HORVU5Hr1G049190.2	Barley	nucleus	38.66	40.32
GSMUA_Achr7P07430_001	Banana	nucleus	24.23	32.87
GSMUA_Achr7P14860_001	Banana	nucleus	27.84	28.42
GSMUA_Achr10P...	Banana	nucleus	27.32	22.75
GSMUA_Achr8P15620_001	Banana	nucleus, plastid	26.8	22.22
GSMUA_Achr4P29470_001	Banana	nucleus	13.92	16.36
GSMUA_Achr10P...	Banana	nucleus	18.56	14.75
GSMUA_Achr1P17980_001	Banana	nucleus	17.53	14.35
GSMUA_Achr4P25530_001	Banana	nucleus	15.46	14.22
GSMUA_Achr7P04050_001	Banana	nucleus	15.98	13.25
GSMUA_AchrUn_...	Banana	nucleus	19.07	13.03
GSMUA_Achr5P11080_001	Banana	nucleus	14.43	12.73
GSMUA_Achr10P...	Banana	nucleus	17.53	12.45
GSMUA_Achr10P...	Banana	nucleus	17.01	12.41
GSMUA_Achr3P14840_001	Banana	nucleus	17.53	12.01
GSMUA_Achr3P09460_001	Banana	nucleus	18.56	11.25
GSMUA_Achr5P27730_001	Banana	nucleus	18.04	11.22
GSMUA_Achr9P06660_001	Banana	nucleus	22.16	11.11
GSMUA_Achr6P15910_001	Banana	nucleus	18.04	11.04
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	18.56	9.92
GSMUA_Achr8P27170_001	Banana	nucleus	22.16	9.62
GSMUA_Achr8P01590_001	Banana	nucleus	18.56	8.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr2G16080_001	EnsemblPlants:GSMUA_Achr2P16080_001
EnsemblPlants:GSMUA_Achr2T16080_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0S8E9	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF336	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002948FAE
SEG:seg	:	:	:	:	:

Description

PRESSED FLOWER a [Source:GMGC_GENE;Acc:GSMUA_Achr2G16080_001]

Coordinates

chr2:+:17121269..17122649

Molecular Weight (calculated)

21572.7 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.695

Length

194 amino acids

Sequence
(BLAST)

001: MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NASQIQQITA HLSLYGRIEG KNVFYWFQNH KARERQKLRR RLGRQHQLLH QSEGPSSPTP PLHNQTPPPN
101: LLYQGCLQEV LTQGMNLVGK LEAGEGQEEE PAASDAVYTQ PWMTMMDGSA AAATAVPPPC CRPLKTLDLF PTKSTGMKDE CSSSKSSSCS TSTN

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.