Factsheet for TraesCS5D01G162600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G156400.1	Wheat	nucleus	97.11	97.51
TraesCS5A01G157300.1	Wheat	nucleus	96.28	96.68
HORVU5Hr1G049190.2	Barley	nucleus	65.29	84.95
Os11t0102100-01	Rice	nucleus	57.85	59.83
Os12t0101600-01	Rice	nucleus	57.85	59.83
GSMUA_Achr4P30610_001	Banana	nucleus	45.04	59.24
OQU82902	Sorghum	nucleus	63.22	58.85
Zm00001d004889_P001	Maize	nucleus	63.64	58.78
GSMUA_Achr8P02040_001	Banana	nucleus	30.58	57.81
Zm00001d052598_P001	Maize	nucleus	62.81	57.36
GSMUA_Achr9P04090_001	Banana	nucleus	44.63	57.14
GSMUA_Achr2P16080_001	Banana	nucleus	45.45	56.7
TraesCS1D01G054000.1	Wheat	nucleus	38.43	34.83
TraesCS3D01G361100.1	Wheat	nucleus	20.66	23.81
TraesCS2D01G515600.1	Wheat	plastid	20.25	20.68
TraesCS3D01G352700.1	Wheat	nucleus	24.79	20.62
TraesCS3D01G352500.1	Wheat	nucleus	25.21	20.47
TraesCS3D01G352600.1	Wheat	nucleus	23.97	20.35
TraesCS5D01G097400.1	Wheat	nucleus	26.03	19.57
TraesCS2D01G100200.1	Wheat	nucleus	16.53	15.15
TraesCS3D01G073300.1	Wheat	nucleus	15.29	14.18
TraesCS3D01G335500.1	Wheat	nucleus	14.05	12.93
TraesCS4D01G176400.1	Wheat	nucleus	16.12	12.75
TraesCS1D01G406900.1	Wheat	nucleus	18.59	9.26
TraesCS3D01G244300.1	Wheat	nucleus, plastid	17.77	8.38

Protein Annotations

EnsemblPlants:TraesCS5D01G162600.1	EnsemblPlantsGene:TraesCS5D01G162600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF336
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:254023381..254024209

Molecular Weight (calculated)

25997.7 Da

IEP (calculated)

8.497

GRAVY (calculated)

-0.587

Length

242 amino acids

Sequence
(BLAST)

001: MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH KARERQRLRR RLCARHQQPS SPAAPPPPPP PHTGAAGGGG
101: NAAGAGAGVN VMHPAVMQLH HHHHTYATSC FMAPQGYLEQ ETAAAGALPV SGLEFAGKTS QQQEWMAQEQ MVMENSNINN SVAAAGGSSA SAGGGMNNMT
201: PPPWPCCRPL RTLELFPTKS TGGGLRDECS SSKSSSCSTS TN

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.