Factsheet for Zm00001d004889_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82902	Sorghum	nucleus	90.46	91.15
Zm00001d052598_P001	Maize	nucleus	90.84	89.81
TraesCS5B01G156400.1	Wheat	nucleus	59.16	64.32
TraesCS5A01G157300.1	Wheat	nucleus	58.78	63.9
TraesCS5D01G162600.1	Wheat	nucleus	58.78	63.64
HORVU5Hr1G049190.2	Barley	nucleus	43.51	61.29
GSMUA_Achr4P30610_001	Banana	nucleus	42.75	60.87
GSMUA_Achr2P16080_001	Banana	nucleus	44.27	59.79
GSMUA_Achr8P02040_001	Banana	nucleus	28.24	57.81
Os11t0102100-01	Rice	nucleus	51.53	57.69
Os12t0101600-01	Rice	nucleus	51.53	57.69
GSMUA_Achr9P04090_001	Banana	nucleus	40.46	56.08
Zm00001d010998_P001	Maize	nucleus	35.5	42.27
Zm00001d035535_P001	Maize	nucleus	38.93	39.53
Zm00001d037309_P001	Maize	nucleus	14.5	30.16
Zm00001d012330_P001	Maize	nucleus	22.14	24.68
Zm00001d042821_P001	Maize	nucleus	20.23	23.98
Zm00001d026453_P001	Maize	plastid	18.7	19.6
Zm00001d042920_P001	Maize	nucleus	23.28	18.83
Zm00001d012419_P001	Maize	nucleus	23.28	17.78
Zm00001d026537_P001	Maize	plastid	20.99	16.92
Zm00001d001948_P001	Maize	nucleus, plastid	20.23	16.56
Zm00001d022524_P001	Maize	nucleus	15.27	15.44
Zm00001d024410_P001	Maize	nucleus	14.12	12.59
Zm00001d028986_P001	Maize	nucleus	14.89	12.07
Zm00001d047559_P001	Maize	nucleus	14.12	11.75
Zm00001d043076_P001	Maize	nucleus	12.21	11.72
Zm00001d012516_P001	Maize	nucleus	12.21	11.35
Zm00001d039017_P001	Maize	nucleus	15.27	8.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EntrezGene:542051	EMBL:AJ536578	EMBL:BT066120	UniProt:C0PCV1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	ProteinID:ONM19752.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF336
UniProt:Q70UV1	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000035CC2F	EnsemblPlantsGene:Zm00001d004889	EnsemblPlants:Zm00001d004889_P001
EnsemblPlants:Zm00001d004889_T001	SEG:seg	:	:	:	:

Description

narrow sheath1WUSCHEL-related homeobox 3A

Coordinates

chr2:-:147004057..147005221

Molecular Weight (calculated)

27837.6 Da

IEP (calculated)

8.161

GRAVY (calculated)

-0.502

Length

262 amino acids

Sequence
(BLAST)

001: MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH KARERQRLRR RLCARHQQQY AQQQATAAAP ASSPNSSATV
101: PSLAAGGSSA GVHPAVMQLH HHQHPYATNF MPHQLGYMGQ QVATVPPVLN PAAAGMVDLA AARAGGGNKA TAAGSGAYGG GAGLYNSCSS NQLEEWEATD
201: AMEHCDASCG AASGSSDEGG ALQLPPCCRR PLKTLDLFPT KSTGLKDECS SSKSSSCSTS TN

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.