CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004889_P001	Maize	nucleus	91.15	90.46
TraesCS5B01G156400.1	Wheat	nucleus	59.23	63.9
TraesCS5A01G157300.1	Wheat	nucleus	58.85	63.49
TraesCS5D01G162600.1	Wheat	nucleus	58.85	63.22
GSMUA_Achr4P30610_001	Banana	nucleus	43.08	60.87
HORVU5Hr1G049190.2	Barley	nucleus	43.46	60.75
GSMUA_Achr2P16080_001	Banana	nucleus	44.62	59.79
GSMUA_Achr8P02040_001	Banana	nucleus	28.46	57.81
Os11t0102100-01	Rice	nucleus	51.92	57.69
Os12t0101600-01	Rice	nucleus	51.92	57.69
GSMUA_Achr9P04090_001	Banana	nucleus	41.15	56.61
OQU77281	Sorghum	mitochondrion, nucleus	40.77	38.97
OQU87881	Sorghum	nucleus	20.38	24.31
OQU82449	Sorghum	plastid	19.23	20.41
OQU87830	Sorghum	nucleus	22.31	17.06
OQU82514	Sorghum	nucleus	21.15	16.82
OQU90491	Sorghum	nucleus	14.23	14.23
KXG24798	Sorghum	nucleus	14.62	13.77
KXG39473	Sorghum	nucleus	15.38	12.74
EES01660	Sorghum	nucleus	12.69	11.87
KXG22537	Sorghum	plastid	15.77	8.27
OQU87296	Sorghum	plastid	16.15	7.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EntrezGene:8058565	UniProt:A0A1Z5RGL8	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:OQU82902	ProteinID:OQU82902	ProteinID:OQU82902.1
PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF336	SMART:SM00389	EnsemblPlantsGene:SORBI_3005G042200
SUPFAM:SSF46689	UniParc:UPI0001A8626E	RefSeq:XP_002449019.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:3893885..3895397

Molecular Weight (calculated)

27586.2 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.533

Length

260 amino acids

Sequence
(BLAST)

001: MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH KARERQRLRR RLCARHQQQY AQQQQQQATA AAPSSSPLPS
101: PAAGGSSAGV HPAVMQLHQH HHPYATNFVP HLGYLGQQAA TVPPVLNPAA AGMVDLAAAG AGAGNKATGA GGGYGGGAAL YNSCSSNQLE EWDPAEAMEH
201: CNASCGAASG SSDEGGAAHL QLPPCCRRPL KTLDLFPTKS TGLKDECSSS KSSSCSTSTN

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.