Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d001948_P001 | Maize | nucleus, plastid | 81.96 | 83.75 |
| Zm00001d026537_P001 | Maize | plastid | 76.45 | 76.92 |
| Os04t0663600-01 | Rice | nucleus | 48.01 | 54.33 |
| Zm00001d037309_P001 | Maize | nucleus | 19.88 | 51.59 |
| TraesCS2A01G491900.1 | Wheat | mitochondrion, plastid | 41.9 | 44.48 |
| OQU87881 | Sorghum | nucleus | 17.43 | 26.15 |
| OQU77281 | Sorghum | mitochondrion, nucleus | 18.65 | 22.43 |
| OQU82449 | Sorghum | plastid | 15.9 | 21.22 |
| OQU82902 | Sorghum | nucleus | 16.82 | 21.15 |
| OQU87830 | Sorghum | nucleus | 17.74 | 17.06 |
| OQU90491 | Sorghum | nucleus | 12.84 | 16.15 |
| KXG39473 | Sorghum | nucleus | 15.29 | 15.92 |
| KXG24798 | Sorghum | nucleus | 12.84 | 15.22 |
| EES01660 | Sorghum | nucleus | 11.31 | 13.31 |
| OQU87296 | Sorghum | plastid | 15.29 | 9.38 |
| KXG22537 | Sorghum | plastid | 13.76 | 9.07 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | UniProt:A0A1Z5RFI9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | EnsemblPlants:OQU82514 | ProteinID:OQU82514 | ProteinID:OQU82514.1 | PFAM:PF00046 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF123 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3006G254900 | SUPFAM:SSF46689 |
| UniParc:UPI0001A87505 | RefSeq:XP_002448707.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:59228203..59230361
Molecular Weight (calculated)
33455.2 Da
IEP (calculated)
8.786
GRAVY (calculated)
-0.177
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANVGAGRS AVGGGGGGGA GGTGTAAASG SVATTAVCRP IGSRWTPTPE QIRILKEFYY GCGIRSPNSE QIQRITAMLR QHGKIEGKNV FYWFQNHKAR
101: ERQKRRLTNL DVNVPTAAAA GAADASTHLG VLSLSSPSGA APPSPTLGFY AGNGGAGSTV LLDTSSDCAA MATETCFLQD YMGVMGTGSA AAASPWACFS
201: SSNTMAAAAA RAPTVTRAPE TLPLFPTGGD DSQPRRPRHG VPVPVAAGEA IRGGSSSSRY LPFWGAAPTT ASATSIGIQQ QHQLLQLQEQ YSFYSNAMPG
301: TGSQDASAAS LELSLSSWCS PYPAGTM
101: ERQKRRLTNL DVNVPTAAAA GAADASTHLG VLSLSSPSGA APPSPTLGFY AGNGGAGSTV LLDTSSDCAA MATETCFLQD YMGVMGTGSA AAASPWACFS
201: SSNTMAAAAA RAPTVTRAPE TLPLFPTGGD DSQPRRPRHG VPVPVAAGEA IRGGSSSSRY LPFWGAAPTT ASATSIGIQQ QHQLLQLQEQ YSFYSNAMPG
301: TGSQDASAAS LELSLSSWCS PYPAGTM
001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
Arabidopsis Description
WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.