CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0854500-01	Rice	nucleus	82.11	89.5
Zm00001d042821_P001	Maize	nucleus	88.53	87.33
TraesCS3B01G399800.1	Wheat	nucleus	77.52	80.86
TraesCS3A01G368100.1	Wheat	nucleus	77.52	79.72
TraesCS3D01G361100.1	Wheat	nucleus	76.61	79.52
HORVU3Hr1G085050.3	Barley	nucleus	75.69	78.57
GSMUA_Achr7P14860_001	Banana	nucleus	46.33	53.16
PGSC0003DMT400053435	Potato	nucleus	37.61	52.23
Solyc03g096300.2.1	Tomato	nucleus	37.16	51.27
KRH73152	Soybean	nucleus	40.83	50.28
AT5G05770.1	Thale cress	nucleus	27.98	50.0
Bra028749.1-P	Field mustard	nucleus	39.91	50.0
VIT_13s0019g03460.t01	Wine grape	nucleus	32.11	49.65
KRG97769	Soybean	nucleus	38.99	48.85
AT3G11260.1	Thale cress	nucleus	40.37	48.35
KRH31116	Soybean	nucleus	39.91	48.33
CDY08539	Canola	nucleus	41.28	47.12
CDY01007	Canola	nucleus	40.83	46.6
CDY04966	Canola	nucleus	40.37	46.07
CDY14103	Canola	nucleus	39.91	45.55
Bra034855.1-P	Field mustard	mitochondrion	29.82	45.45
CDX98862	Canola	nucleus	38.99	44.27
CDX70130	Canola	nucleus	38.07	43.23
Bra009132.1-P	Field mustard	nucleus	38.07	43.23
OQU82902	Sorghum	nucleus	24.31	20.38
OQU82449	Sorghum	plastid	22.02	19.59
OQU77281	Sorghum	mitochondrion, nucleus	23.85	19.12
OQU82514	Sorghum	nucleus	26.15	17.43
OQU87830	Sorghum	nucleus	24.77	15.88
EES01660	Sorghum	nucleus	15.14	11.87
KXG24798	Sorghum	nucleus	14.68	11.59
KXG39473	Sorghum	nucleus	16.51	11.46
OQU90491	Sorghum	nucleus	13.3	11.15
KXG22537	Sorghum	plastid	17.43	7.66
OQU87296	Sorghum	plastid	15.6	6.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EntrezGene:8060112	UniProt:A0A1W0W0I4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:OQU87881	ProteinID:OQU87881	ProteinID:OQU87881.1
PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF149	SMART:SM00389	EnsemblPlantsGene:SORBI_3003G360200
SUPFAM:SSF46689	UniParc:UPI0001A851FD	RefSeq:XP_002458781.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:67781768..67783049

Molecular Weight (calculated)

24525.5 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.761

Length

218 amino acids

Sequence
(BLAST)

001: MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLSA FGKVESKNVF YWFQNHKARE RHHHKKRRRG ASSPDSGSGS GSGSNEEDGG
101: RAAAASHDAE ADVDLVLQPP ESKREARSYA HHHHRLAVTC YVRDVVEQQE ATWERPTREV ETLELFPLKS YVDLEAAEKV RYVRGSAASE QCREFSFFDV
201: SGGRDPPLEL RLCSFGPY

Best Arabidopsis Sequence Match ( AT3G11260.1 )
(BLAST)

001: MSFSVKGRSL RGNNNGGTGT KCGRWNPTVE QLKILTDLFR AGLRTPTTDQ IQKISTELSF YGKIESKNVF YWFQNHKARE RQKRRKISID FDHHHHQPST
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL

Arabidopsis Description

WOX5WUSCHEL-related homeobox 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.