Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70130 | Canola | nucleus | 94.27 | 94.27 |
| CDY14103 | Canola | nucleus | 87.5 | 87.96 |
| AT5G05770.1 | Thale cress | nucleus | 55.73 | 87.7 |
| CDY04966 | Canola | nucleus | 84.9 | 85.34 |
| CDY01007 | Canola | nucleus | 69.27 | 69.63 |
| CDY08539 | Canola | nucleus | 68.75 | 69.11 |
| Solyc03g096300.2.1 | Tomato | nucleus | 50.52 | 61.39 |
| PGSC0003DMT400053435 | Potato | nucleus | 49.48 | 60.51 |
| KRH73152 | Soybean | nucleus | 53.65 | 58.19 |
| VIT_13s0019g03460.t01 | Wine grape | nucleus | 41.15 | 56.03 |
| KRG97769 | Soybean | nucleus | 50.52 | 55.75 |
| KRH31116 | Soybean | nucleus | 51.04 | 54.44 |
| GSMUA_Achr7P14860_001 | Banana | nucleus | 43.75 | 44.21 |
| Os01t0854500-01 | Rice | nucleus | 43.23 | 41.5 |
| OQU87881 | Sorghum | nucleus | 44.27 | 38.99 |
| Zm00001d042821_P001 | Maize | nucleus | 43.75 | 38.01 |
| TraesCS3B01G399800.1 | Wheat | nucleus | 41.15 | 37.8 |
| HORVU3Hr1G085050.3 | Barley | nucleus | 41.15 | 37.62 |
| TraesCS3D01G361100.1 | Wheat | nucleus | 41.15 | 37.62 |
| TraesCS3A01G368100.1 | Wheat | nucleus | 41.15 | 37.26 |
| Zm00001d012330_P001 | Maize | nucleus | 43.23 | 35.32 |
| CDY02582 | Canola | nucleus | 19.27 | 30.58 |
| CDY70975 | Canola | nucleus | 22.92 | 26.51 |
| CDY71075 | Canola | nucleus | 15.1 | 23.97 |
| CDY43848 | Canola | nucleus | 27.08 | 20.72 |
| CDY40847 | Canola | nucleus | 27.08 | 20.39 |
| CDY17046 | Canola | nucleus | 26.56 | 19.92 |
| CDY25659 | Canola | nucleus | 26.04 | 19.92 |
| CDX83299 | Canola | nucleus | 23.44 | 19.91 |
| CDX95764 | Canola | nucleus | 22.92 | 19.82 |
| CDY01358 | Canola | nucleus | 13.54 | 19.55 |
| CDX77191 | Canola | nucleus | 23.96 | 19.49 |
| CDY31716 | Canola | nucleus | 23.44 | 19.23 |
| CDY55370 | Canola | nucleus | 30.21 | 19.21 |
| CDY38144 | Canola | nucleus | 30.21 | 19.21 |
| CDY29212 | Canola | nucleus | 29.17 | 19.05 |
| CDY47803 | Canola | nucleus | 29.69 | 18.87 |
| CDY41086 | Canola | nucleus | 26.04 | 18.73 |
| CDX80277 | Canola | nucleus | 19.79 | 18.1 |
| CDY30337 | Canola | nucleus | 29.69 | 18.04 |
| CDY32648 | Canola | nucleus | 16.15 | 17.71 |
| CDY33030 | Canola | nucleus | 19.27 | 17.62 |
| CDX81686 | Canola | nucleus | 26.56 | 17.59 |
| CDY33728 | Canola | nucleus | 25.0 | 17.45 |
| CDX75955 | Canola | nucleus | 30.73 | 16.86 |
| CDY51928 | Canola | nucleus | 30.73 | 16.71 |
| CDY02885 | Canola | nucleus | 16.67 | 16.08 |
| CDX92182 | Canola | nucleus | 29.17 | 15.95 |
| CDY66658 | Canola | nucleus | 29.17 | 15.95 |
| CDY31870 | Canola | nucleus | 15.62 | 15.38 |
| CDX93197 | Canola | nucleus | 15.62 | 15.38 |
| CDY41648 | Canola | nucleus | 13.54 | 15.2 |
| CDY29511 | Canola | nucleus | 14.58 | 13.79 |
| CDY65899 | Canola | nucleus | 14.58 | 13.4 |
| CDY40623 | Canola | nucleus | 17.19 | 12.55 |
| CDX72546 | Canola | nucleus | 16.67 | 12.26 |
| CDY24814 | Canola | nucleus | 15.1 | 12.13 |
| CDX75511 | Canola | nucleus | 16.15 | 12.11 |
| CDX69148 | Canola | nucleus | 16.67 | 12.08 |
| CDX87744 | Canola | nucleus | 19.79 | 11.88 |
| CDY48780 | Canola | nucleus | 19.79 | 11.88 |
| CDY29211 | Canola | mitochondrion | 8.33 | 10.74 |
| CDY72488 | Canola | nucleus, plastid | 13.54 | 10.53 |
| CDY66087 | Canola | nucleus | 15.1 | 10.36 |
| CDY02686 | Canola | nucleus | 15.1 | 10.25 |
| CDY16883 | Canola | nucleus | 14.58 | 10.14 |
| CDY38461 | Canola | nucleus | 14.06 | 9.85 |
| CDY17211 | Canola | nucleus | 19.27 | 9.49 |
| CDY69228 | Canola | nucleus | 19.27 | 9.49 |
| CDY21173 | Canola | nucleus | 14.06 | 9.34 |
| CDY29949 | Canola | nucleus | 14.06 | 9.34 |
| CDX79549 | Canola | nucleus | 18.75 | 9.07 |
| CDY51756 | Canola | plastid | 15.1 | 8.9 |
| CDY50656 | Canola | nucleus | 14.58 | 8.26 |
Protein Annotations
| EnsemblPlants:CDX98862 | EnsemblPlantsGene:GSBRNA2T00106965001 | Gene3D:1.10.10.60 | GO:A0A078ECT3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF149 | PFAM:PF00046 | PFscan:PS50071 | ProteinID:CDX98862 | ProteinID:CDX98862.1 | SEG:seg |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EBC550 | MapMan:15.5.3.6 | : | : |
Description
BnaC09g49730D
Coordinates
chrLK031907:+:328005..328702
Molecular Weight (calculated)
22101.0 Da
IEP (calculated)
9.180
GRAVY (calculated)
-0.878
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGEFSIKA RGLGNNNNGG GGTGTKCGRW NPTVEQVKLL TDLFKAGLRT PSTDQIQKIS MELSFYGKIE SKNVFYWFQN HKARERQKRR KISTVDFDHR
101: QDTNLSIPHR DNIRHHQQPP KDTFEACEKE EKVIETLQLF PLSNVERARE NTTAARHNEY IREQVNTTVF STYSSCGAEM EHPPLDLRLS FL
101: QDTNLSIPHR DNIRHHQQPP KDTFEACEKE EKVIETLQLF PLSNVERARE NTTAARHNEY IREQVNTTVF STYSSCGAEM EHPPLDLRLS FL
001: MSFSVKGRSL RGNNNGGTGT KCGRWNPTVE QLKILTDLFR AGLRTPTTDQ IQKISTELSF YGKIESKNVF YWFQNHKARE RQKRRKISID FDHHHHQPST
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL
Arabidopsis Description
WOX5WUSCHEL-related homeobox 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.