Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024485.1-P | Field mustard | nucleus | 97.28 | 97.28 |
| CDY29211 | Canola | mitochondrion | 45.58 | 89.93 |
| CDY55370 | Canola | nucleus | 82.31 | 80.13 |
| CDY38144 | Canola | nucleus | 81.63 | 79.47 |
| CDY47803 | Canola | nucleus | 80.61 | 78.48 |
| CDY30337 | Canola | nucleus | 82.99 | 77.22 |
| AT2G17950.1 | Thale cress | nucleus | 76.53 | 77.05 |
| GSMUA_Achr7P07430_001 | Banana | nucleus | 25.17 | 51.75 |
| CDY02582 | Canola | nucleus | 13.27 | 32.23 |
| CDX98862 | Canola | nucleus | 19.05 | 29.17 |
| CDX70130 | Canola | nucleus | 18.71 | 28.65 |
| CDY01007 | Canola | nucleus | 18.37 | 28.27 |
| CDY14103 | Canola | nucleus | 18.37 | 28.27 |
| CDY04966 | Canola | nucleus | 18.37 | 28.27 |
| CDY08539 | Canola | nucleus | 18.03 | 27.75 |
| CDY70975 | Canola | nucleus | 14.97 | 26.51 |
| CDY71075 | Canola | nucleus | 10.54 | 25.62 |
| CDX95764 | Canola | nucleus | 17.35 | 22.97 |
| CDY31716 | Canola | nucleus | 17.69 | 22.22 |
| CDX83299 | Canola | nucleus | 17.01 | 22.12 |
| CDY43848 | Canola | nucleus | 18.37 | 21.51 |
| CDY25659 | Canola | nucleus | 18.37 | 21.51 |
| CDX77191 | Canola | nucleus | 17.01 | 21.19 |
| CDY40847 | Canola | nucleus | 18.03 | 20.78 |
| CDY17046 | Canola | nucleus | 18.03 | 20.7 |
| CDY01358 | Canola | nucleus | 8.84 | 19.55 |
| CDY41086 | Canola | nucleus | 16.67 | 18.35 |
| CDY33728 | Canola | nucleus | 17.01 | 18.18 |
| CDX81686 | Canola | nucleus | 17.69 | 17.93 |
| CDY32648 | Canola | nucleus | 10.54 | 17.71 |
| CDY33030 | Canola | nucleus | 12.59 | 17.62 |
| CDX80277 | Canola | nucleus | 12.59 | 17.62 |
| CDY51928 | Canola | nucleus | 20.75 | 17.28 |
| CDX75955 | Canola | nucleus | 20.41 | 17.14 |
| CDY41648 | Canola | nucleus | 9.86 | 16.96 |
| CDX92182 | Canola | nucleus | 20.07 | 16.81 |
| CDY66658 | Canola | nucleus | 20.07 | 16.81 |
| CDY29511 | Canola | nucleus | 11.22 | 16.26 |
| CDY02885 | Canola | nucleus | 10.88 | 16.08 |
| CDY31870 | Canola | nucleus | 10.54 | 15.9 |
| CDX93197 | Canola | nucleus | 10.54 | 15.9 |
| CDY72488 | Canola | nucleus, plastid | 12.93 | 15.38 |
| CDY65899 | Canola | nucleus | 10.88 | 15.31 |
| CDX75511 | Canola | nucleus | 12.59 | 14.45 |
| CDX87744 | Canola | nucleus | 15.65 | 14.38 |
| CDY48780 | Canola | nucleus | 15.65 | 14.38 |
| CDY29949 | Canola | nucleus | 13.95 | 14.19 |
| CDY21173 | Canola | nucleus | 13.95 | 14.19 |
| CDX72546 | Canola | nucleus | 12.59 | 14.18 |
| CDY16883 | Canola | nucleus | 12.93 | 13.77 |
| CDY66087 | Canola | nucleus | 12.93 | 13.57 |
| CDY38461 | Canola | nucleus | 12.59 | 13.5 |
| CDY02686 | Canola | nucleus | 12.93 | 13.43 |
| CDY40623 | Canola | nucleus | 11.9 | 13.31 |
| CDX69148 | Canola | nucleus | 11.9 | 13.21 |
| CDY17211 | Canola | nucleus | 16.67 | 12.56 |
| CDY24814 | Canola | nucleus | 10.2 | 12.55 |
| CDY69228 | Canola | nucleus | 16.33 | 12.31 |
| CDY51756 | Canola | plastid | 13.61 | 12.27 |
| CDX79549 | Canola | nucleus | 15.99 | 11.84 |
| CDY50656 | Canola | nucleus | 13.27 | 11.5 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | GO:A0A078GVP4 | UniProt:A0A078GVP4 | EnsemblPlants:CDY29212 | ProteinID:CDY29212 |
| ProteinID:CDY29212.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00042123001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF510 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EF184B | SEG:seg | : | : | : |
Description
BnaA06g25450DBnaA06g25450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVP4]
Coordinates
chrLK032233:-:252198..253870
Molecular Weight (calculated)
33477.5 Da
IEP (calculated)
8.035
GRAVY (calculated)
-1.030
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPAQHHHQA DQESGNNNKS VSGGYTCRQT STRWTPTTDQ IRILKDLYYN NGVRSPTADQ IQKISARLRQ YGKIEGKNVF YWFQNHKARE RQKKRFNSTT
101: MTIPTSSSPN SVMMASDHYH HNHHHHGVTI QRPALVNVKL DQENHMFHQN RSYPSFNNGN TNHASSGTEY GVFSASNGYI SSHIYEPMEQ DCSMSYNNVG
201: GGWTNIDHNH HYSTPAYNFL DRPMPLSGLE GHHQEEGEYG GDAYLEHRRT LPLFPLHGED HINGGGGSIW KYRQSDGCDR YGRGPCASLK LCLN
101: MTIPTSSSPN SVMMASDHYH HNHHHHGVTI QRPALVNVKL DQENHMFHQN RSYPSFNNGN TNHASSGTEY GVFSASNGYI SSHIYEPMEQ DCSMSYNNVG
201: GGWTNIDHNH HYSTPAYNFL DRPMPLSGLE GHHQEEGEYG GDAYLEHRRT LPLFPLHGED HINGGGGSIW KYRQSDGCDR YGRGPCASLK LCLN
001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
Arabidopsis Description
WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.